Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29h06
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634...    31   0.83 
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55...    30   1.5  
12_01_0730 + 6505759-6508806                                           29   1.9  
03_05_0613 + 26124714-26124857,26125692-26126330,26126455-261266...    29   2.5  
12_01_0714 + 6223269-6226250                                           29   3.4  
09_04_0607 - 18918624-18918710,18918918-18919034,18919652-189200...    29   3.4  
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550...    28   5.9  

>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
            6349369-6349475,6349608-6349733,6349809-6349890,
            6350057-6350130,6351184-6352631,6353391-6353540,
            6353664-6353906,6354009-6354266,6355554-6356015
          Length = 1130

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -3

Query: 367  FCFVSLFTIAAGKLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIVFNTSCVKI 200
            FC     T +  K P+    +HTWKLK  FS     K  S LK L  V ++S + +
Sbjct: 1072 FCSNGSITNSQSKQPDEIYTVHTWKLKW-FSEETVVKFISLLKALYSVSSSSSLPV 1126


>08_01_0077 +
           546473-546512,546739-547013,547772-547885,548002-550245
          Length = 890

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 60  AIDPTNKIVIEQVDNVDAFVHILEPG 137
           +I+  NKI I   D VD  +H+LE G
Sbjct: 624 SINDNNKIAIANADAVDPLIHVLETG 649


>12_01_0730 + 6505759-6508806
          Length = 1015

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 159 LSRYHQFPGVVSSIIFTQLVLNTIISVLSE--DGSLLPLKLENTCFNFHVCNKRFVFGNL 332
           LSR ++F G    IIF    L TI    +    G+L     + +  N  + N  F  G +
Sbjct: 297 LSR-NKFQGSFPPIIFQHKKLRTINLSKNPGISGNLPNFSQDTSLENLFLNNTNFT-GTI 354

Query: 333 PAAIVNNETKQKLRIGSPIFAG 398
           P +I+N  + +KL +G+  F+G
Sbjct: 355 PGSIINLISVKKLDLGASGFSG 376


>03_05_0613 +
           26124714-26124857,26125692-26126330,26126455-26126695,
           26126913-26127496
          Length = 535

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
 Frame = +3

Query: 9   SYTLNRTDVMELXXXKYAIDPTNKIVIEQVDNVDAFVHILEPGQEVFDE-----TLSRYH 173
           SYT    ++ EL   K   +P  +  +E+ + +    ++L+    V         +  +H
Sbjct: 419 SYTYEDDNMEELDQKKVECEPNKEAALEKFEWISDDENVLDNEDRVTGAYHGYIDIIGFH 478

Query: 174 QFPGVV--SSIIFTQLVLNTIISVLSEDGSLLPLKLENTCFNFHVCNKRFVFGNLP 335
            +  ++  S  +   L  +   S + + G+L P     T +N H+ N+RF+  + P
Sbjct: 479 PYKEIIFLSESLKRGLAYHLSSSKVEDIGNLYP-----TSYNIHLINERFITASFP 529


>12_01_0714 + 6223269-6226250
          Length = 993

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +3

Query: 171 HQFPGVVSSIIFTQLVLNTIISVLSE--DGSLLPLKLENTCFNFHVCNKRFVFGNLPAAI 344
           ++F G    IIF    L TI    +    G+L     + +  N  + N  F  G +P +I
Sbjct: 278 NKFQGSFPPIIFQHKKLRTINLSKNPGISGNLPNFSQDTSLENLFLNNTNFT-GTIPGSI 336

Query: 345 VNNETKQKLRIGSPIFAG 398
           +N  + +KL +G+  F+G
Sbjct: 337 INLISVKKLDLGASGFSG 354


>09_04_0607 -
           18918624-18918710,18918918-18919034,18919652-18920030,
           18921220-18921359
          Length = 240

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 81  IVIEQVDNVDAFVHILEPGQEVFDETLSRYHQFPGVVSSIIF 206
           I+++ +   + F   +E   E+F+ +LS   Q+PGV + + F
Sbjct: 179 ILLDDLSLANQFQTFIERIDEIFEVSLSTNQQYPGVYALLFF 220


>03_02_0081 -
           5506194-5506197,5506310-5507170,5507299-5507456,
           5507549-5507740
          Length = 404

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +3

Query: 138 QEVFDETLSRYHQFPGVVSSIIFTQLVLNTIISVLSEDG 254
           + ++D   +    FP  + +++  QL + T ++V+ +DG
Sbjct: 197 ERLYDGRFAHVEFFPADIGAVLGNQLSIGTFLAVIDDDG 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,497
Number of Sequences: 37544
Number of extensions: 307811
Number of successful extensions: 906
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)