Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29h02
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1289 + 25531531-25531995                                         30   1.8  
10_06_0004 - 9407954-9408007,9408219-9408386,9408441-9408542,940...    29   2.3  
07_03_0705 - 20846810-20848165                                         29   3.1  
03_02_0953 + 12684695-12684818,12684910-12685517                       29   4.1  
03_01_0584 - 4325907-4326190,4326638-4327060,4327218-4327449           29   4.1  
06_02_0352 + 15083174-15083433,15083973-15084108                       28   7.1  
04_01_0206 + 2507827-2508705,2508844-2509902                           28   7.1  
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694...    28   7.1  
03_04_0153 + 17745473-17745889,17746120-17746272,17747307-177475...    27   9.4  

>07_03_1289 + 25531531-25531995
          Length = 154

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -3

Query: 620 SKASPTEIARRPTACPFEPASFAVCTCSRQT 528
           SK  PT  A RPTA    PA   V  C  QT
Sbjct: 99  SKLQPTPAAARPTATGAPPAMVVVSACQFQT 129


>10_06_0004 -
           9407954-9408007,9408219-9408386,9408441-9408542,
           9408710-9408934,9409889-9410047,9411768-9411900,
           9412827-9413758,9413842-9413987,9415863-9416082
          Length = 712

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 490 GKVSFVVQ--TARNHV*RLHVQTANDAGSNGHAVGRRAISVGDAFDH 624
           G VSF V   T  NH  ++ V  AN+    G+  G R    G+A DH
Sbjct: 188 GNVSFTVSLTTPLNH--QIRVTNANEIIMEGYCPGERPTEYGNASDH 232


>07_03_0705 - 20846810-20848165
          Length = 451

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 635 SSRLWSKASP-TEIARRPTACPFEPAS 558
           SS +W++ +P TE A RP A PF+PAS
Sbjct: 111 SSLIWTQCAPCTECAARP-APPFQPAS 136


>03_02_0953 + 12684695-12684818,12684910-12685517
          Length = 243

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 343 RRDGVGSRKQIYYGTRRRMGGRWRCD--DDARVSR 245
           RR   G R+ +Y G RRR  G+W  +  D A+ +R
Sbjct: 56  RRQRRGERRTLYRGIRRRPWGKWAAEIRDPAKGAR 90


>03_01_0584 - 4325907-4326190,4326638-4327060,4327218-4327449
          Length = 312

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -1

Query: 400 FASSISVSAHVDQLFGRLRRRDGVGSRKQIYYGTRRRMGGRWRCD-DDARVSRRV-LRRY 227
           F+S +S S+   +            S+K  Y G RRR  GR+  +  D +  RRV L  Y
Sbjct: 78  FSSDVSSSSRPRRRVAAAAAGRRKASKKSKYRGVRRRPSGRFAAEIRDPKKGRRVWLGTY 137

Query: 226 GS 221
           GS
Sbjct: 138 GS 139


>06_02_0352 + 15083174-15083433,15083973-15084108
          Length = 131

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 510 SNCSKPRLTTTRADRK*RRFKRTRCWTPCDLCWRCLR 620
           + C    +  +  DR+   F  +R  T C  CW+C+R
Sbjct: 51  ATCGGEAVVPSPGDRRTVVFATSRATTFCRPCWKCMR 87


>04_01_0206 + 2507827-2508705,2508844-2509902
          Length = 645

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 613 HLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEQF 512
           +LQ R H +++   L+L++  S   + KRG   F
Sbjct: 190 YLQDRDHRIREEEELSLQYAHSLHHICKRGIVNF 223


>01_06_1604 +
           38567374-38567391,38567505-38567636,38569377-38569445,
           38569545-38569775,38570883-38571013,38571471-38571629,
           38573078-38573366
          Length = 342

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 56  KLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQNT 205
           K RLK++ P    I      ++ D   +  +N + L++ + HV    +NT
Sbjct: 145 KTRLKLESPRSWRISIDEVAVVADSDGDADVNAEQLLHLLEHVGAIGENT 194


>03_04_0153 +
           17745473-17745889,17746120-17746272,17747307-17747512,
           17747752-17747959
          Length = 327

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 499 ILFRSQQKYHGHDHVADFVFCRTGA 425
           +LFR++ +  GH HVA F    +GA
Sbjct: 48  LLFRARARRRGHGHVARFAASASGA 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,405,986
Number of Sequences: 37544
Number of extensions: 285954
Number of successful extensions: 925
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)