Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29h02
(637 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT003302-1|AAO25062.1| 653|Drosophila melanogaster GH11071p pro... 29 4.0
AE014134-784|AAN10338.1| 653|Drosophila melanogaster CG2950-PC,... 29 4.0
AE014134-783|AAF50972.1| 653|Drosophila melanogaster CG2950-PB,... 29 4.0
AE014134-782|AAF50973.1| 653|Drosophila melanogaster CG2950-PA,... 29 4.0
L77907-1|AAC37264.1| 1883|Drosophila melanogaster chromodomain-h... 29 7.0
BT011071-1|AAR82736.1| 1645|Drosophila melanogaster SD21488p pro... 29 7.0
AY095050-1|AAM11378.1| 1101|Drosophila melanogaster LD39323p pro... 29 7.0
AE014134-528|AAF51170.1| 1883|Drosophila melanogaster CG3733-PA ... 29 7.0
BT025089-1|ABE73260.1| 764|Drosophila melanogaster IP13014p pro... 28 9.2
>BT003302-1|AAO25062.1| 653|Drosophila melanogaster GH11071p
protein.
Length = 653
Score = 29.5 bits (63), Expect = 4.0
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +2
Query: 287 HPTPRPVINLFARANAVAPAQPSEELINMRRYRNAARKLIHHYSLNSTSSTEYKISDVVM 466
H + V + A A A A AQ + + R + L+H YS N S EYK + V
Sbjct: 373 HQQQQQVAAVAAAAAAAAHAQATAAAGKVLRPNQ--QLLMHSYSTNDASVGEYKFTVNVG 430
Query: 467 TMIFLLRSEKYHSLFKLLETTFDDYTCRPQ-MTQVQTDTLLDAVRSLLEMPST 622
+ + + L ++ + DDY + + ++ D SL+ PST
Sbjct: 431 QHLIKITGD-CCELVRVAKLVLDDYFSSSEFLASIEAGAAFDGT-SLVTTPST 481
>AE014134-784|AAN10338.1| 653|Drosophila melanogaster CG2950-PC,
isoform C protein.
Length = 653
Score = 29.5 bits (63), Expect = 4.0
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +2
Query: 287 HPTPRPVINLFARANAVAPAQPSEELINMRRYRNAARKLIHHYSLNSTSSTEYKISDVVM 466
H + V + A A A A AQ + + R + L+H YS N S EYK + V
Sbjct: 373 HQQQQQVAAVAAAAAAAAHAQATAAAGKVLRPNQ--QLLMHSYSTNDASVGEYKFTVNVG 430
Query: 467 TMIFLLRSEKYHSLFKLLETTFDDYTCRPQ-MTQVQTDTLLDAVRSLLEMPST 622
+ + + L ++ + DDY + + ++ D SL+ PST
Sbjct: 431 QHLIKITGD-CCELVRVAKLVLDDYFSSSEFLASIEAGAAFDGT-SLVTTPST 481
>AE014134-783|AAF50972.1| 653|Drosophila melanogaster CG2950-PB,
isoform B protein.
Length = 653
Score = 29.5 bits (63), Expect = 4.0
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +2
Query: 287 HPTPRPVINLFARANAVAPAQPSEELINMRRYRNAARKLIHHYSLNSTSSTEYKISDVVM 466
H + V + A A A A AQ + + R + L+H YS N S EYK + V
Sbjct: 373 HQQQQQVAAVAAAAAAAAHAQATAAAGKVLRPNQ--QLLMHSYSTNDASVGEYKFTVNVG 430
Query: 467 TMIFLLRSEKYHSLFKLLETTFDDYTCRPQ-MTQVQTDTLLDAVRSLLEMPST 622
+ + + L ++ + DDY + + ++ D SL+ PST
Sbjct: 431 QHLIKITGD-CCELVRVAKLVLDDYFSSSEFLASIEAGAAFDGT-SLVTTPST 481
>AE014134-782|AAF50973.1| 653|Drosophila melanogaster CG2950-PA,
isoform A protein.
Length = 653
Score = 29.5 bits (63), Expect = 4.0
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +2
Query: 287 HPTPRPVINLFARANAVAPAQPSEELINMRRYRNAARKLIHHYSLNSTSSTEYKISDVVM 466
H + V + A A A A AQ + + R + L+H YS N S EYK + V
Sbjct: 373 HQQQQQVAAVAAAAAAAAHAQATAAAGKVLRPNQ--QLLMHSYSTNDASVGEYKFTVNVG 430
Query: 467 TMIFLLRSEKYHSLFKLLETTFDDYTCRPQ-MTQVQTDTLLDAVRSLLEMPST 622
+ + + L ++ + DDY + + ++ D SL+ PST
Sbjct: 431 QHLIKITGD-CCELVRVAKLVLDDYFSSSEFLASIEAGAAFDGT-SLVTTPST 481
>L77907-1|AAC37264.1| 1883|Drosophila melanogaster
chromodomain-helicase-DNA-bindingprotein protein.
Length = 1883
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = -1
Query: 607 QQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEQRMIL 494
Q R+H + Q+ ++N+ L +AR V ++ E+ +Q+M+L
Sbjct: 943 QARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVL 980
>BT011071-1|AAR82736.1| 1645|Drosophila melanogaster SD21488p protein.
Length = 1645
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = -1
Query: 607 QQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEQRMIL 494
Q R+H + Q+ ++N+ L +AR V ++ E+ +Q+M+L
Sbjct: 943 QARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVL 980
>AY095050-1|AAM11378.1| 1101|Drosophila melanogaster LD39323p
protein.
Length = 1101
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = -1
Query: 607 QQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEQRMIL 494
Q R+H + Q+ ++N+ L +AR V ++ E+ +Q+M+L
Sbjct: 411 QARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVL 448
>AE014134-528|AAF51170.1| 1883|Drosophila melanogaster CG3733-PA
protein.
Length = 1883
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = -1
Query: 607 QQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEQRMIL 494
Q R+H + Q+ ++N+ L +AR V ++ E+ +Q+M+L
Sbjct: 943 QARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVL 980
>BT025089-1|ABE73260.1| 764|Drosophila melanogaster IP13014p
protein.
Length = 764
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 147 NCTF*CSSQSKGNIWGHIANCIGSSIFNRNLFISKYNAIALI 22
NC+F ++S +I+G I N S + N L +S YN +++
Sbjct: 399 NCSFNIKNESHSSIYGIIKNHKLSGVPNSGLNLSDYNIPSIL 440
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,908,139
Number of Sequences: 53049
Number of extensions: 498067
Number of successful extensions: 1753
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1753
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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