Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29h02
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-6|AAB53828.1|  873|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine rece...    28   4.9  
U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine rece...    28   4.9  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    28   4.9  

>U00048-6|AAB53828.1|  873|Caenorhabditis elegans Hypothetical
           protein C05D11.8 protein.
          Length = 873

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 628 DCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEQRMILFRSQ 482
           D   +HL     GVQ R+ +    + S  + ++RGFE  + R    + Q
Sbjct: 751 DSSEKHLLTILQGVQTRIDVMAEGIESFEIWIERGFETLKARACRIKQQ 799


>U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 9 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 416 SLNSTSSTEYKISDVVMTMIFLLRSEKYHSLF 511
           S+NST ST++++ +V  + +F++    YH  F
Sbjct: 227 SINSTLSTKFQLEEVYFSTMFVITVVFYHVAF 258


>U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 8 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 416 SLNSTSSTEYKISDVVMTMIFLLRSEKYHSLF 511
           S+NST ST++++ +V  + +F++    YH  F
Sbjct: 227 SINSTLSTKFQLEEVYFSTMFVITVVFYHVAF 258


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 485 RSEKYHSLFKLLETTFDDYTCRPQMTQ--VQTDTLLDAV 595
           RS  Y  L + L   F DY CR Q++      D L+D +
Sbjct: 442 RSSMYRQLEEQLNKAFPDYVCRSQLSSDYESADILVDPI 480


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,304,362
Number of Sequences: 27780
Number of extensions: 255110
Number of successful extensions: 859
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)