Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29g23
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    33   0.18 
10_08_0742 + 20244984-20247008                                         29   2.3  
02_01_0405 - 2952434-2955583                                           29   2.3  
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    28   5.2  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    28   5.2  
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    28   6.9  
03_05_1070 + 30125131-30127029                                         28   6.9  
10_01_0287 - 2982618-2982810,2983111-2983196                           27   9.2  

>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 610 PADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 494
           PADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>10_08_0742 + 20244984-20247008
          Length = 674

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -2

Query: 616 HTPADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQECDSVLRLDGTGKVVINLTI 437
           H   DL+  V   S     P +  T   GGK N    S Q   + +  DG+ K ++N+TI
Sbjct: 161 HVGVDLNSLVSNVS----EPAAYFTDGGGGKRNLTLESAQPIQAWVDYDGSAK-ILNVTI 215

Query: 436 SRV 428
           + V
Sbjct: 216 APV 218


>02_01_0405 - 2952434-2955583
          Length = 1049

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 411 CLEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATVSVEGGDACAPEYPGT 590
           C +H+    I  L   L +  N  +L+ SCTE+     L     +S +GG A A    GT
Sbjct: 8   CKKHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLRFLRELSQDGGLA-ASWQDGT 66

Query: 591 ASCKSAGV-CS 620
             CK  G+ CS
Sbjct: 67  DCCKWDGITCS 77


>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 519 LFLPPAATVSVEGGD--ACAPEYPGTASCKSAGVCSS 623
           L +PP    +V  GD  + A + P  ASC++AG C++
Sbjct: 99  LQIPPPERRAVGDGDLLSSAGDLPDAASCRAAGSCAA 135


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLS 491
           L+H  TR+++ L    PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
            24566397-24566513,24566565-24567131,24568632-24568702,
            24569833-24569903,24570270-24570441,24571229-24572212,
            24573128-24574808
          Length = 1998

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 465  PVKWSLISRSHEYNYVLNNGSTELCHETSCGV 370
            PVK S +S    Y ++   G   LCH T  G+
Sbjct: 964  PVKISYVSLQLLYGFLFWKGKKNLCHNTDQGI 995


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 538 AAGGKNNCAWRSVQECDS-VLRLD 470
           A GG+   AWRS    DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544


>10_01_0287 - 2982618-2982810,2983111-2983196
          Length = 92

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 621 CYTHPPICMTLFQGTQVHMRHP 556
           CY H P+   L  G Q+   HP
Sbjct: 38  CYIHKPVYQELLHGDQLRFTHP 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,633,473
Number of Sequences: 37544
Number of extensions: 322183
Number of successful extensions: 895
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)