Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29g22
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    25   2.2  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   2.9  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    24   5.0  
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    23   6.7  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    23   6.7  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    23   8.8  
SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p...    23   8.8  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    23   8.8  

>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 68  KEHCNNCNEIYCYN 109
           + HC  C +++CYN
Sbjct: 46  RHHCRWCGKLFCYN 59


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +2

Query: 68  KEHCNNCNEIYCYNSTAQRM 127
           K HC NC  ++C   +++ +
Sbjct: 189 KHHCRNCGGVFCNQCSSKTL 208


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = -1

Query: 98  IFHCNYYNVPLFVVNCPENTAY-----SYVSDGCIDF 3
           + + +Y ++  + V+CPEN  Y     SY  +  ID+
Sbjct: 124 LLNLDYVDLSEYFVSCPENAIYLVVLPSYEIESSIDY 160


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 98  IFHCNYYNVPLFVVNCPENTAYSYVSD 18
           IF   Y ++PL  VN   N  Y Y+++
Sbjct: 35  IFDSIYQDIPLKKVNFECNNEYQYINN 61


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 95  FHCNYYNVPLFVVNCPENTAYSYVSDGCIDF 3
           F  N  ++ L+ +  P+N     +  GCID+
Sbjct: 350 FVINVLSIALYKLFTPKNRYMKALESGCIDY 380


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 169 IFLGRCVKLIKLEKHTLCRG-IVTIYFIAIITMFL 68
           +FL +CVK+I +  +   +  +VTI+   ++  F+
Sbjct: 188 VFLAKCVKVIAVGLYNSKKDLVVTIWLAWVVICFI 222


>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 104 YNSTAQRMFFEFDQFH 151
           +NS+ +R + EF++FH
Sbjct: 59  HNSSVRRRYSEFEKFH 74


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 169 IFLGRCVKLIKLEKHTLCRG-IVTIYFIAIITMFL 68
           +FL +CVK+I +  +   +  +VTI+   ++  F+
Sbjct: 178 VFLAKCVKVIAVGLYNSKKDLVVTIWLAWVVICFI 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,014,507
Number of Sequences: 5004
Number of extensions: 18440
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)