Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29g22
         (287 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    28   0.93 
Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    26   3.8  
X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    26   3.8  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    26   3.8  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    26   3.8  
U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine rece...    26   5.0  
Z81555-4|CAB04515.1|  202|Caenorhabditis elegans Hypothetical pr...    25   6.6  
U64608-2|AAB04591.1|  537|Caenorhabditis elegans Hypothetical pr...    25   6.6  
AY519854-1|AAR89635.1|  229|Caenorhabditis elegans arsenite indu...    25   6.6  
Z93383-10|CAB07632.1|  286|Caenorhabditis elegans Hypothetical p...    25   8.7  
Z92786-5|CAB07207.1|  262|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U64835-2|AAO25998.1|  337|Caenorhabditis elegans Serpentine rece...    25   8.7  
AF099001-6|AAC68738.2|  661|Caenorhabditis elegans Lateral signa...    25   8.7  
AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical...    25   8.7  

>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 96  YIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 209
           ++VT  ++ +CFS+L +       I   +VCI I RRKI
Sbjct: 172 HVVTGTKNILCFSALYTILHMTIPITPVYVCILILRRKI 210


>Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 68  KEHCNNCNEIYCYNSTAQR 124
           K HC NC +I+C  ST  R
Sbjct: 882 KHHCRNCGQIFC--STCSR 898


>AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 68  KEHCNNCNEIYCYNSTAQR 124
           K HC NC +I+C  ST  R
Sbjct: 882 KHHCRNCGQIFC--STCSR 898


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 174 QCFVCIYIRRKIHRF 218
           QC VC Y R+K  RF
Sbjct: 383 QCMVCCYFRKKARRF 397


>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 133 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLT 5
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++T
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVT 332


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 133 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLT 5
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++T
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVT 332


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 133 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLT 5
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++T
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVT 332


>U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 13 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 114 RHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 209
           ++ +CFS+L +       I   ++CI I RRKI
Sbjct: 178 KNIICFSALFTILHMTLPITPVYICILILRRKI 210


>Z81555-4|CAB04515.1|  202|Caenorhabditis elegans Hypothetical
           protein F58E10.4 protein.
          Length = 202

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -1

Query: 218 KPMYFPSNINTNKALTDFLRPLCETDQTRKTYA 120
           KP+  P ++N ++ + + ++  C+T +  K Y+
Sbjct: 63  KPVPTPKDVNVDQQVNEHIQNNCQTPKRAKVYS 95


>U64608-2|AAB04591.1|  537|Caenorhabditis elegans Hypothetical
           protein T22B7.4 protein.
          Length = 537

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +3

Query: 3   KVNTTIANIRIRRVFGTVDDKQRNIVIIAMKYIVTIPRHSV 125
           +V  +I+N R   +   VDD+++ +++   K ++ +PR +V
Sbjct: 172 EVKGSISNHRYECI--DVDDQEKKLLVFTRKQLIPMPRFTV 210


>AY519854-1|AAR89635.1|  229|Caenorhabditis elegans arsenite
           inducible RNA associatedprotein (aip-1) protein.
          Length = 229

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -1

Query: 218 KPMYFPSNINTNKALTDFLRPLCETDQTRKTYA 120
           KP+  P ++N ++ + + ++  C+T +  K Y+
Sbjct: 90  KPVPTPKDVNVDQQVNEHIQNNCQTPKRAKVYS 122


>Z93383-10|CAB07632.1|  286|Caenorhabditis elegans Hypothetical
           protein F54B8.11 protein.
          Length = 286

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 98  IFHCNYYNVPLFVVNCP 48
           IFH N   +P+F++ CP
Sbjct: 115 IFHNNRRKIPIFLIICP 131


>Z92786-5|CAB07207.1|  262|Caenorhabditis elegans Hypothetical
           protein F47H4.8 protein.
          Length = 262

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 59  RQTKEHCNNC-NEI-YCYNSTAQRMFFEFDQFHTTA*ENLSMLCLYLY*KEN 208
           RQT +  +N  N +  C+     R+FF    FH T+  N   + L L+ KE+
Sbjct: 142 RQTIDEQDNLFNTLGICFEDDKTRIFFNEKTFHYTSVGNECRITLDLFTKED 193


>Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical
           protein C34B4.5 protein.
          Length = 348

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 66  QRNIVIIAMKYIVTIPRHSVCFSSLISFTQR 158
           Q N+ +I M Y++    HS+ FS+ +   QR
Sbjct: 115 QTNLYLI-MSYVIDFCLHSILFSNFVMAIQR 144


>U64835-2|AAO25998.1|  337|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 29 protein.
          Length = 337

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 121 LCRGIVTIYFIAIITMFLCLSSTV 50
           L  GI+TIYF+   T F  L+S V
Sbjct: 70  LADGIITIYFLVSDTSFFRLNSYV 93


>AF099001-6|AAC68738.2|  661|Caenorhabditis elegans Lateral
           signaling target protein 2 protein.
          Length = 661

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 68  KEHCNNCNEIYCY 106
           + HC NC  I+C+
Sbjct: 585 RHHCRNCGRIFCH 597


>AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.2 protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 77  CNNCNEIYCYNS 112
           CN+CNEI+ +N+
Sbjct: 166 CNHCNEIFLFNT 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,661,666
Number of Sequences: 27780
Number of extensions: 108312
Number of successful extensions: 384
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)