Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29g19
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.34 
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    28   0.59 
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    27   1.4  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    25   3.1  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    24   9.6  

>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 162 LLFKNNLNLMVACNLINTL-INFEIN-VXGKSLLLSKFVN 275
           LLFKN+L L+ AC  +NT      IN +    L+L +F N
Sbjct: 156 LLFKNSLVLLAACYFMNTTPSRLVINLIRSGYLILKRFAN 195


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 12  FXKRSIMKXGDDDA---TRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNL 182
           F  R++++  D+D     RL+YS   A     T +A  +  S    A+  V+ +  KNNL
Sbjct: 140 FSLRTVLQSRDEDLLWRARLYYSFLQADMDYLTNYARPSPDSAVPGAVGTVAIITSKNNL 199

Query: 183 N 185
           +
Sbjct: 200 S 200


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 283 MQKLTNLLSNKLLPXTLISKLINVLIKLHATIKFKLFLKSNVLTNV 146
           ++ LTN LS   LP +LIS  I +L KL ++      L   ++T V
Sbjct: 385 LKSLTNSLSTMALPDSLISLHIELLRKLCSSENDFCSLLVEIITEV 430


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 292 LLAMQKLTNLLSNKLLPXTLISKLINVLIKLH 197
           LLA Q  T L+SNK L   L  +L   L  +H
Sbjct: 204 LLAEQAETELISNKRLSTKLPGRLQRALASIH 235


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 259 SNKLLPXTLISKLINVLIKLHATIKFKLFLKSNVLTNVMAY 137
           S+ +L   LIS L++  + L AT KF+ ++ +  L  +  Y
Sbjct: 460 SHAVLLTFLISALVHEFVMLLATGKFRCYILTFQLLQIPLY 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,189,900
Number of Sequences: 5004
Number of extensions: 18838
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)