Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29g19
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    30   0.74 
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    29   0.97 
10_08_0912 - 21520088-21520426,21520534-21520674,21521235-215212...    29   1.3  
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512...    28   3.0  
10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572     27   6.9  
08_02_1613 + 28236989-28238593                                         26   9.1  
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63...    26   9.1  

>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 283 MQKLTNLLSNKLLPXTLISKLINVLIKLHATIKFKLFLKSNVLTNV 146
           +  L+NL+   L    L S+L+ +L KLH+ +  KL++ S + T +
Sbjct: 861 ISSLSNLVRLSLRENYLESELVKILGKLHSLLSLKLYVNSYLGTEL 906


>04_04_1696 + 35448667-35449641,35449726-35450562,35450667-35451001,
            35451371-35451497,35451594-35451752,35451872-35453053,
            35453164-35453424,35453513-35453761
          Length = 1374

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +3

Query: 201  NLINTLINFEINVXGKSLLLSKFVNFCIANSDGVTIQXKMXTNVLSF 341
            +L+++L++ E++V GKS L  K+   C+  +   T++ K   + L++
Sbjct: 1086 SLLSSLLHPEVSVNGKSSLKGKYSVICVHANQFYTLRKKCCPSELAY 1132


>10_08_0912 -
           21520088-21520426,21520534-21520674,21521235-21521294,
           21521394-21521493,21521591-21521904,21522253-21522621,
           21522993-21523104,21523627-21523787
          Length = 531

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 24/87 (27%), Positives = 44/87 (50%)
 Frame = +3

Query: 33  KXGDDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLIN 212
           + G+ + T L  SN      ++++ A++NH     YAIT    LL +    + ++ +  N
Sbjct: 280 RRGNGEDTNL--SNTKCTVEVSSISADKNHMPDVSYAITHY-RLLVEQLERVDLSMSETN 336

Query: 213 TLINFEINVXGKSLLLSKFVNFCIANS 293
             + F INV   SL++  ++ + I NS
Sbjct: 337 IKLAFWINVY-NSLVMHAYLAYGIPNS 362


>08_02_0801 +
           21349434-21349438,21349952-21349978,21351175-21351249,
           21351333-21351369,21351469-21351552,21351821-21351881,
           21351961-21352067,21352162-21352227,21352366-21352461
          Length = 185

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 117 NHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFE 230
           N   FY YA  +  T   K  + + VAC L+N ++  +
Sbjct: 82  NFQDFYPYAFRYCLTEDKKKCIEIPVACELLNLVLGLQ 119


>10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572
          Length = 326

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/43 (20%), Positives = 27/43 (62%)
 Frame = +3

Query: 159 TLLFKNNLNLMVACNLINTLINFEINVXGKSLLLSKFVNFCIA 287
           T ++++ L+++V   L+N +  +   + G +++ ++F ++C A
Sbjct: 162 TTIYRSKLSMIVLEKLLNKICRYVRIIAGNTVVKARFQDYCKA 204


>08_02_1613 + 28236989-28238593
          Length = 534

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 171 KNNLNLMVACNLINTLINFEI-NVXGKSL 254
           +N+L L+ ACNL+  L  F +    GKSL
Sbjct: 485 RNSLFLLAACNLLGLLFTFLVPESKGKSL 513


>06_01_0078 -
           628946-629524,629620-629684,629814-629935,630042-630129,
           630508-630819,630908-632189,632296-632784
          Length = 978

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 222 NFEINVXGKSLLLSKFVN-FCIANSDGVTIQXKMXTNVLSF 341
           N  I+V G+   L K V  F  A   G+ I  K  TN+LSF
Sbjct: 720 NIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSF 760


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,760,156
Number of Sequences: 37544
Number of extensions: 95629
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)