Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29g19
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z83116-5|CAB05568.2|  450|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical p...    27   6.1  

>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 60  LHYSNAHAKQTLATLFA-NRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINT 215
           LH+ NA+ +  + TL A NR  S F+ +    + ++LF  +L  ++   +  T
Sbjct: 98  LHFGNAYFQYFMVTLMAVNRTTSIFFYFVNEKIWSILFPLSLGAVILVEVFFT 150


>Z83116-5|CAB05568.2|  450|Caenorhabditis elegans Hypothetical
           protein M01B2.6 protein.
          Length = 450

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +3

Query: 63  HYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLI---NTLINFEI 233
           +YS     +      +   H+ F    +TF  TL+F+N    M   N+    N+ + F  
Sbjct: 98  YYSGTSDSEITINQVSKLTHAIFAFVQLTFDGTLVFRNKNRFMALRNIAKTENSTVKFMF 157

Query: 234 NVXG 245
           ++ G
Sbjct: 158 SIGG 161


>Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical
           protein Y57G11C.37 protein.
          Length = 837

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 87  QTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN 236
           +++ +++A R    F E  I F   LLF     L   C LIN LI   ++
Sbjct: 613 ESVMSVYA-RPLDDFLEMFIQFGYVLLFSPAFPLAAVCALINNLIEIRVD 661


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,555,180
Number of Sequences: 27780
Number of extensions: 105316
Number of successful extensions: 242
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)