Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29g15
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    41   2e-04
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.52 
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   4.9  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   6.4  
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    25   8.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.5  
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |...    25   8.5  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   8.5  

>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
 Frame = +1

Query: 292 SNVVGKLALTELPFPLTMTAVQXXXXXXXXXXXXXXX----GVRSTRWPTNYWTRVLXPL 459
           SN   K    EL  P+T+T +Q                   G    + P+ Y      PL
Sbjct: 17  SNTTSKSIFNELRCPVTLTFLQFGFVAFFSAVCLLFRKQFLGGTGIQKPSKYVLYTTLPL 76

Query: 460 AIAKLLTTLCSQVSIWKVPVSYAHTVKATTPLWTAGLARVLF 585
           +I ++   +   ++  K+PVS  HTVKA +PL+T    R +F
Sbjct: 77  SIFQIGGHVFGSLATTKIPVSTVHTVKALSPLFTVLAYRFMF 118


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -1

Query: 229 SRLYPLRFFFLSESTLKQSCYHRITED--L*FNNSLLFRTIHEIILCNIYIFGNQACLNY 56
           +R Y  + F ++ +  + SC++ I     L  N  +    +++I LCN YI     C  Y
Sbjct: 5   NRNYSHKNFNVTNNNFQVSCFNPILLKIILFLNTIVCIFYVYKIALCNEYIRFLAKCFLY 64

Query: 55  IVM*HGTISFL 23
           I+    T+S L
Sbjct: 65  ILRCMSTVSLL 75


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 180 FRVLSDKKKKRNGYNRLQARDTNSWLP 260
           FR  S+   K+ GY R Q   T +W P
Sbjct: 506 FRPDSEFASKKEGYTRYQMNPTENWGP 532


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 463 SPRVXRHGSNSSSAIASNVLHTGLARVHSARPLHTAVPLS 344
           SP      S  +S I S+     +A VH  RP H + PLS
Sbjct: 120 SPHADFSFSPPASKIQSHEPLNDMAAVHPLRPSHVSGPLS 159


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 52  QYNLSKPDYQKCICYTK 102
           Q+++ KPD   C C+T+
Sbjct: 224 QFDIVKPDSSSCCCFTR 240


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 309 TGINRATISTNYDSGTAVCSGLAECTRASPVWSTFDAMA 425
           T + RAT S NY++ +A  S L   + AS   ++  ++A
Sbjct: 54  TLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLA 92


>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 277 MLSSASNVVGKLALTELPFPL 339
           +L S  NV+ K AL +LP+PL
Sbjct: 19  VLLSQGNVLKKTALFQLPYPL 39


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 276 IPRCAQEANY*CLAPGAGCTHCAFFFYQK 190
           I RCA  A     +PG  C +C+F  ++K
Sbjct: 424 IMRCAVCAELFSYSPGLQCENCSFVCHKK 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,002
Number of Sequences: 5004
Number of extensions: 50760
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)