Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29g15
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46933-2|CAA87035.1|  101|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF016420-6|AAB65311.3|  530|Caenorhabditis elegans Udp-glucurono...    30   1.5  
Z36238-1|CAA85275.2|  400|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen pro...    28   4.5  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    27   7.8  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       27   7.8  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       27   7.8  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      27   7.8  

>Z46933-2|CAA87035.1|  101|Caenorhabditis elegans Hypothetical
           protein F34H10.2 protein.
          Length = 101

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -1

Query: 295 YWLNLT----YTTLRTGSQLLVSRAWSRLYPL 212
           YW+N      Y   RT S+  VS+ W RLYPL
Sbjct: 41  YWVNRAMPNKYRKYRTYSRRSVSQRWKRLYPL 72


>AF016420-6|AAB65311.3|  530|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein7 protein.
          Length = 530

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 241 SRAWSRLYPLRFFFLSESTLKQSCYHRITEDL*FNNSLLFRTIHEIILCNIYIFGN 74
           S  W R+  +  FF+  + + ++ Y  + + L F   L  R I EI+  + Y+F N
Sbjct: 200 SGVWDRINNVWMFFM-RTRMFRAVYWNLLDKLRFKTGLEIRNIDEIVAESAYLFYN 254


>Z36238-1|CAA85275.2|  400|Caenorhabditis elegans Hypothetical
           protein R74.2 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 431 TIGPVSXYPWRSPNFLPHCARKFPFGKCQSPMPTQ*KRRLLSGRRGW 571
           TI P    P R+P   P+     P G+ Q+P+ T  KR +++ RRG+
Sbjct: 99  TIAPKFDIPTRAPLLNPN-----PIGRNQNPVQTTTKRPVVAYRRGY 140


>AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen
           protein 71 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 431 FVGHRVERTPHRASAGTLSEAAAHSC 354
           FV   VE  PH A+ G+ SE   H C
Sbjct: 146 FVAVGVEEGPHTATTGSDSEGTCHDC 171


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 297 CRGQTGINRATISTNYDSGTAVCSGLAECTRASPVWSTFD 416
           CRG++      I + YD+ T +C      TRA   W  FD
Sbjct: 363 CRGRS----RNIFSEYDTCTTMCEETNVLTRAEVCWDKFD 398


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical
           protein C47D12.1b protein.
          Length = 4061

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 304 PRHYWLNLT--YTTLRTGSQLLVSRAWSRLYPLRFFFLSESTLKQSCYHRI 158
           P +Y+L L   + ++  G+Q ++   + +L P    FL++ T  QSC HRI
Sbjct: 781 PLNYFLLLRALFRSIGGGAQDILYGKFLQLLPNLLQFLNKLTNLQSCQHRI 831


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical
           protein C47D12.1a protein.
          Length = 4064

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 304 PRHYWLNLT--YTTLRTGSQLLVSRAWSRLYPLRFFFLSESTLKQSCYHRI 158
           P +Y+L L   + ++  G+Q ++   + +L P    FL++ T  QSC HRI
Sbjct: 781 PLNYFLLLRALFRSIGGGAQDILYGKFLQLLPNLLQFLNKLTNLQSCQHRI 831


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 297 CRGQTGINRATISTNYDSGTAVCSGLAECTRASPVWSTFD 416
           CRG++      I + YD+ T +C      TRA   W  FD
Sbjct: 363 CRGRS----RNIFSEYDTCTTMCEETNVLTRAEVCWDKFD 398


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 297 CRGQTGINRATISTNYDSGTAVCSGLAECTRASPVWSTFD 416
           CRG++      I + YD+ T +C      TRA   W  FD
Sbjct: 363 CRGRS----RNIFSEYDTCTTMCEETNVLTRAEVCWDKFD 398


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 304 PRHYWLNLT--YTTLRTGSQLLVSRAWSRLYPLRFFFLSESTLKQSCYHRI 158
           P +Y+L L   + ++  G+Q ++   + +L P    FL++ T  QSC HRI
Sbjct: 781 PLNYFLLLRALFRSIGGGAQDILYGKFLQLLPNLLQFLNKLTNLQSCQHRI 831


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,353,276
Number of Sequences: 27780
Number of extensions: 294864
Number of successful extensions: 760
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)