Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29g14
(300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 55 2e-09
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 52 2e-08
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 48 4e-07
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 47 5e-07
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 44 6e-06
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 42 2e-05
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 42 2e-05
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 42 2e-05
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 42 2e-05
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 41 3e-05
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 40 6e-05
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 39 2e-04
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 38 4e-04
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 38 4e-04
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.002
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.002
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 34 0.005
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 34 0.005
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.007
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 32 0.021
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 31 0.027
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 30 0.084
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.15
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 29 0.19
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 28 0.34
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 1.4
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 1.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 2.4
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 3.1
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 3.1
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 24 4.2
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce... 24 4.2
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 23 7.3
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 9.6
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 55.2 bits (127), Expect = 2e-09
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +2
Query: 62 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 190
EC+IC E+ + +++ LPC H FH CI PWL+ TC CR
Sbjct: 395 ECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR 437
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 51.6 bits (118), Expect = 2e-08
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 62 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQE-KQTCPNCRKD 196
EC IC E K +++ALPC H FH CI W+ + + CP C +
Sbjct: 320 ECVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTE 365
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 47.6 bits (108), Expect = 4e-07
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 65 CSICFEIMLKDQELMA--LPCTHNFHSQCIMPWLQEKQTCPNCRKD 196
C IC++ M ++ E A +PC H F C+ WL+ TCP CRK+
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKE 152
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 47.2 bits (107), Expect = 5e-07
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 65 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQE-KQTCPNCRKD 196
C IC+ D L LPC H FH+QCI W+ K +CP C +D
Sbjct: 205 CIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNED 249
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 43.6 bits (98), Expect = 6e-06
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 62 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQ---TCPNCRK 193
EC IC +L Q L PC+H++H +CI P L E +C CRK
Sbjct: 191 ECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCFICRK 237
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 41.9 bits (94), Expect = 2e-05
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 86 MLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 190
M+ + M PC H +H QC++ W++ + CP CR
Sbjct: 636 MMVRRNYMLTPCHHLYHRQCLLQWMETRSICPVCR 670
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 41.9 bits (94), Expect = 2e-05
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 62 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRK 193
EC IC E + Q C H + +C++ WL+E ++CP CR+
Sbjct: 84 ECPICTEAL---QRPFTTHCGHTYCYECLLNWLKESKSCPTCRQ 124
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 41.9 bits (94), Expect = 2e-05
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 113 LPCTHNFHSQCIMPWLQEKQTCPNCRK 193
LPC H H C+ WL+ +QTCP CR+
Sbjct: 326 LPCGHILHFHCLRNWLERQQTCPICRR 352
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 41.9 bits (94), Expect = 2e-05
Identities = 24/63 (38%), Positives = 29/63 (46%)
Frame = +2
Query: 62 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRKDA*SKVIKEVKSADWI 241
EC ICF ML D + PC H F C+M L + CP CR S V+ E + I
Sbjct: 168 ECQICFG-MLYDP--VVSPCGHTFCGPCLMQALTQSPQCPTCRFGLPSPVVLEHAKSHSI 224
Query: 242 NVF 250
F
Sbjct: 225 TTF 227
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 41.1 bits (92), Expect = 3e-05
Identities = 16/67 (23%), Positives = 24/67 (35%)
Frame = +2
Query: 50 WSLEECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRKDA*SKVIKEVKS 229
W L + +PC H FH+ C+ W + TCP CR + + E
Sbjct: 33 WDSSSVPASISSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPLCRTEFLKVDVLEFVK 92
Query: 230 ADWINVF 250
W +
Sbjct: 93 GPWYRAY 99
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 40.3 bits (90), Expect = 6e-05
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +2
Query: 56 LEECSICFEIMLKDQEL---MALPCTHNFHSQCIMPWLQEKQT--CPNCR 190
+EEC+IC+ ++ ++ L C H FH+ C+ W + + CP CR
Sbjct: 1555 VEECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCR 1604
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 38.7 bits (86), Expect = 2e-04
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 59 EECSICFE-IMLKDQELMALPCTHNFHSQCIMPWLQEKQ-TCPNCR 190
E C +C L D+ C H FH +CI WL Q +CP CR
Sbjct: 523 ERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 37.5 bits (83), Expect = 4e-04
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 65 CSICFEIMLKDQE-LMALPCTHNFHSQCIMPWLQEKQTCPNCRK 193
C IC E M +E ++ L C+H H +C +++ CP C K
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYK 314
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 37.5 bits (83), Expect = 4e-04
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 62 ECSICFEIMLKDQELMA-LPCTHNFHSQCIMPW-LQEKQTCPNCRK 193
EC+IC ++ L LPC H FH CI P+ L+ CP C++
Sbjct: 497 ECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQ 542
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 35.1 bits (77), Expect = 0.002
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 53 SLEECSICFEIMLKDQELMALP-CTHNFHSQCIMPWLQE-KQTCPNCR 190
S + C IC E L C H FH CI WL +CP CR
Sbjct: 762 SADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 35.1 bits (77), Expect = 0.002
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 56 LEECSICFEIMLKD-QELMALPCTHNFHSQCIMPWLQEKQTCPNCR 190
L C +C E M L+ + C H FH C+ W +CP CR
Sbjct: 205 LPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKW--GNSSCPVCR 248
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 33.9 bits (74), Expect = 0.005
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 65 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 190
C IC E + + C+H F S CI +L+E CP CR
Sbjct: 29 CLICHEYF---RAPLITSCSHTFCSFCIRDYLREHPMCPACR 67
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 33.9 bits (74), Expect = 0.005
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 62 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRK-DA*SKVI 214
+CS+C E + A C H F CI W +K CP CR + SK+I
Sbjct: 255 KCSLCMEFIHCPA---ATECGHIFCWSCINGWTSKKSECPLCRAFSSPSKII 303
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 33.5 bits (73), Expect = 0.007
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 62 ECSICFEIMLKDQELMAL-PCTHN-FHSQCIMPWLQEKQTCPNCRK 193
+C IC + KD L PC H+ F CI W+ + TCP C++
Sbjct: 20 DCVICLQ---KDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKR 62
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 31.9 bits (69), Expect = 0.021
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 119 CTHNFHSQCIMPWLQEKQTCP 181
C H FH CI WL + CP
Sbjct: 74 CNHAFHFHCISRWLNTRNVCP 94
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 31.5 bits (68), Expect = 0.027
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 65 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 190
C IC +I+ ++ C H + S C+ WL+ +CP C+
Sbjct: 1092 CIICRDII---KQGFITTCGHLYCSFCLEAWLKHSSSCPMCK 1130
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 29.9 bits (64), Expect = 0.084
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 62 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEK-QTCPNC 187
+CS+C K + + C H F S C+ P+ + K TCP C
Sbjct: 638 KCSVCNFSNWKSK--LIPNCGHAFCSNCMEPFYEHKTSTCPQC 678
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.1 bits (62), Expect = 0.15
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 56 LEECSICFEIMLKDQELMAL-PCTHNFHSQCIMPW 157
L ECS+C + + + + C H FH CI W
Sbjct: 194 LYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKW 228
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 0.19
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +2
Query: 62 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWL---QEKQTCPNCRK 193
+C IC + + L PC H F + CI+ L Q CP CR+
Sbjct: 205 KCVICLD---SPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRR 248
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 27.9 bits (59), Expect = 0.34
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 119 CTHNFHSQCIMPWLQEKQTCPNCRKDA*SKVIKE 220
C H FH+ CI WL + C D + V+ +
Sbjct: 52 CKHIFHAHCIQNWLATSGSQGQCPMDRQTFVVAD 85
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 1.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 107 MALPCTHNFHSQCIMPWLQEKQTCPNCRKD 196
+A C H+F QC + ++ TC C D
Sbjct: 265 IATTCGHHFCEQCAITRYRKTPTCIQCGAD 294
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 1.8
Identities = 8/41 (19%), Positives = 19/41 (46%)
Frame = +2
Query: 26 HSAFRKRSWSLEECSICFEIMLKDQELMALPCTHNFHSQCI 148
H +++ + + C++C E+ L C+ H +C+
Sbjct: 414 HQFVQRQFYQIMRCAVCAELFSYSPGLQCENCSFVCHKKCV 454
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/35 (25%), Positives = 16/35 (45%)
Frame = +2
Query: 65 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEK 169
C +C + D + C +H C++P L +K
Sbjct: 262 CKVCKKWCAFDFSVQCADCKKYYHMDCVVPPLLKK 296
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 24.6 bits (51), Expect = 3.1
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 59 EECSICFEIMLKDQELMALPCTHNFHSQCIM 151
E C C + + + ++ PC H FH C++
Sbjct: 835 ESCWHCNQPLFSEPFVL-FPCQHAFHRSCML 864
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 24.6 bits (51), Expect = 3.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 23 DHSAFRKRSWSLEECSICFEIMLKDQELMALPCTHNFHSQCIMP 154
D+S K S CF+ ++ L CTH F++Q + P
Sbjct: 1044 DYSVLMKVVGVFANYSDCFQRNRHLVHMVLLCCTHVFYNQTLKP 1087
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 24.2 bits (50), Expect = 4.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 262 LITKKNIDPVSAFYFLYHLR 203
++TKKN+ P+S + F ++R
Sbjct: 10 VLTKKNLPPLSLYNFYIYIR 29
>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 192
Score = 24.2 bits (50), Expect = 4.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +2
Query: 56 LEECSICFEIML---KDQELMALPCTH--NFHSQCIM 151
LE+ I + I L KD+ LPCTH + CI+
Sbjct: 108 LEKLGIRYRIALRIAKDERFERLPCTHKGTYADDCIV 144
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 119 CTHNFHSQCIMPWLQEK 169
C ++FH CI P ++EK
Sbjct: 281 CPNSFHFTCIDPPIEEK 297
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 23.0 bits (47), Expect = 9.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 263 INNKKKH*SSQRFLLPLSPSIRRPSGNWGTSVSP 162
+N +K+ + R+L L PS N TS+SP
Sbjct: 81 LNEEKESDTQTRYLKQLINICNSPSKNHETSLSP 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,033
Number of Sequences: 5004
Number of extensions: 22912
Number of successful extensions: 85
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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