Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29g12
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    28   6.6  
U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily ass...    28   6.6  
Z99281-15|CAB16528.1|  199|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical
           protein C32H11.4 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 75  VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 185
           +GM P  + + + +FA+  S D    + SP  P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182


>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 497 TRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFRRDQ 610
           T+      N ++H+RHH  E VL AC      F RRD+
Sbjct: 300 TQVADSKANLRRHARHHSGEKVL-ACPFCARFFSRRDK 336


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
           protein C52B9.8 protein.
          Length = 1336

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/68 (20%), Positives = 36/68 (52%)
 Frame = +3

Query: 291 IARHLVGNKERGIKRILIPSATNYQEVFNLNXMMQAEQLIFHLIYNNEEAVNVICDNLKY 470
           IAR  + N++  I++++      Y+ + +     + +Q + +L+   ++ +  +CD LK 
Sbjct: 231 IAREEMKNEKNRIQKLIQEDEEGYRAMLD----EKKDQRLVYLLEQTDDYIKSLCDLLKQ 286

Query: 471 TEGFTSGT 494
            +  T+G+
Sbjct: 287 QQNATAGS 294


>U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 174 protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 518 RNYKKHSRHHKPEHVLFA 571
           +++KKH  H +PEHV +A
Sbjct: 72  KDHKKHMSHERPEHVEYA 89


>Z99281-15|CAB16528.1|  199|Caenorhabditis elegans Hypothetical
           protein Y57G11C.25 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 3/126 (2%)
 Frame = +3

Query: 141 ACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDD-NQFKMTIARHLVGNK 317
           A  T + P SP  +  +  F  N       + +K V P    DD  +  M + R     K
Sbjct: 13  AAWTSQQPRSPRMFDQENGFSQNFQPF--MQQNKTVNPCTISDDVREEMMRLRRRENAFK 70

Query: 318 ERGIKRILIPSATNYQEVFNLNXMMQAEQLIF-HLIYNNEEAVNVICDNLKYTEGFTSGT 494
               K   +  A +Y E       ++  QL   +L  NN +   V+CDN   T     GT
Sbjct: 71  TALCKTFQLTKACSYGEQCKFAHSVEELQLKHQNLGINNPKYKTVLCDNFSTTGHCKYGT 130

Query: 495 Q-RVIH 509
           + + IH
Sbjct: 131 KCQFIH 136


>Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical
           protein F01D5.3 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 96  MRVNRCIFASIVSFDACITYKSPCSPDAYHD--DGWFICNSHLIKRF 230
           M +   I    VS  AC    +PC  D Y D  D   +CN+ + K F
Sbjct: 1   MLLQSSILLLSVSLAACQISTAPCQDDPYTDCRDYAALCNNPMYKNF 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,413
Number of Sequences: 27780
Number of extensions: 311191
Number of successful extensions: 843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)