Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29g02
         (645 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DFX9 Cluster: Chromosome undetermined scaffold_5, who...    34   3.4  
UniRef50_Q9FX25 Cluster: Auxin response factor 13; n=11; Arabido...    33   4.5  

>UniRef50_A0DFX9 Cluster: Chromosome undetermined scaffold_5, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_5,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 471

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 62  TCFSLKCCL-FCIN*CYSTKYITVN 133
           TC S  CCL FC+  CY TK + VN
Sbjct: 295 TCLSFLCCLIFCVFKCYRTKRVVVN 319


>UniRef50_Q9FX25 Cluster: Auxin response factor 13; n=11;
           Arabidopsis thaliana|Rep: Auxin response factor 13 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 621

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = -3

Query: 406 KNRPIHWTSAVVGPMANCLQNHILCSNVNAQSTPCSNPKYFNASNSRFLF*Y 251
           K++  H  S+V+   ANC+Q+ ++ S VNA  T C     +  S+S+F+  Y
Sbjct: 228 KHQQGHIPSSVIS--ANCMQHGVIASVVNAFKTKCMFNVVYKPSSSQFVISY 277


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,118,399
Number of Sequences: 1657284
Number of extensions: 10007797
Number of successful extensions: 20946
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20940
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)