Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29g02
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1027 - 29826076-29826189,29827304-29827476,29827659-29827710     30   1.8  
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324...    29   3.2  
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522...    29   4.2  
02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227     28   5.5  

>03_05_1027 - 29826076-29826189,29827304-29827476,29827659-29827710
          Length = 112

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 332 QQCERTEYTVQQSQIFQRIELKIFILIHRKFSLTAV 225
           +QCE+ E   Q+  +F  + ++I +L+ R FSL  V
Sbjct: 41  KQCEKEEEEEQKQGLFGCVHVRISVLLMRDFSLIGV 76


>07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,
            3242729-3242788,3242868-3242960,3243073-3243369,
            3243450-3243761,3243857-3244114,3244227-3244375,
            3244470-3245102,3245367-3245640,3245736-3245777,
            3246332-3246586,3246700-3246711
          Length = 951

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
 Frame = -2

Query: 428  LKRLPNGQKPSYSLDQCSR--WTDGELSPEP-YFMQQCERTEYTVQQSQIFQRIELKIFI 258
            L+ +P G + S +L  C      +  L PE  ++   C++ +  +++  +++  E+ +  
Sbjct: 726  LELIPKGNEDSVALHGCLEAFLKEEPLGPEDMWYCPCCKKHQQAMKKLDLWRLPEVLVIH 785

Query: 257  LIHRKFSLTAVIQFPFRTF*MFLAHWVTIFSLLINRSELN 138
            L  ++FS T   +    TF  F    + + S +I++SEL+
Sbjct: 786  L--KRFSYTQFTRNKLETFVDFPISDLDLSSYIIDKSELS 823


>09_06_0055 -
           20550889-20551531,20551612-20551889,20552035-20552203,
           20552397-20552534,20553945-20553997,20554521-20554574,
           20556062-20556295,20556399-20556986,20557065-20557419,
           20557494-20557694,20557925-20557998,20558114-20558254,
           20558611-20558670,20558750-20558806,20559281-20559318,
           20559419-20559578
          Length = 1080

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 259 IKILSSMR*NIWDCCTVYSVRSHCCIKYGSGDSSPS 366
           I+ILS+      DCC     R  CC+  G  D  P+
Sbjct: 676 IRILSAWPAGSIDCCEEMINRCFCCVTGGDSDPEPA 711


>02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227
          Length = 1000

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 495 DAFWRENL*PKLHCLTRFCANLTKAL 418
           D  W + L    HC  RFCA LT AL
Sbjct: 317 DDMWGDVLRESGHCWKRFCAPLTNAL 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,569,098
Number of Sequences: 37544
Number of extensions: 254622
Number of successful extensions: 515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)