Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29f20
         (371 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    88   3e-20
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    88   3e-20
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   4.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   8.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 88.2 bits (209), Expect = 3e-20
 Identities = 41/51 (80%), Positives = 47/51 (92%)
 Frame = +3

Query: 219 MSNLADPVAFAKDFLAGGISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQ 371
           MS LADPVAFAKDFLAGG++AA+SKT V PIERVKLLLQVQH+SKQI+ +Q
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQ 51


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 88.2 bits (209), Expect = 3e-20
 Identities = 41/51 (80%), Positives = 47/51 (92%)
 Frame = +3

Query: 219 MSNLADPVAFAKDFLAGGISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQ 371
           MS LADPVAFAKDFLAGG++AA+SKT V PIERVKLLLQVQH+SKQI+ +Q
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQ 51


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 144 VIPHPRVPQLPPRHIHLVKIT 206
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 221 HFVRLCDLH*VNMSRWEL 168
           +F+++C ++ VNM+  EL
Sbjct: 130 NFIKVCSVNDVNMTITEL 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,260
Number of Sequences: 438
Number of extensions: 1948
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)