Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29f19
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 33 0.11
01_06_1034 + 33962813-33963802 29 2.4
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 29 3.2
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 27 7.4
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 27 7.4
09_02_0109 - 4372621-4373024,4373498-4373760,4373988-4374157 27 9.8
07_03_0632 - 20112297-20116562 27 9.8
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 27 9.8
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 27 9.8
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 271 AKFYNVIDFCKGLE-IAHDDILDCNWD 348
A+FYNV C +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330
>01_06_1034 + 33962813-33963802
Length = 329
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 400 WISACEK*FRLNGKLDRCPNCN 335
W AC + R++G+ CPNCN
Sbjct: 8 WCYACRRPIRVSGQDITCPNCN 29
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR 468
+D D + LNE++ ++K K+DL L+ K L ++ R
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKER 701
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 502 AATRCFCCQNLTASKFSTTPAWSRTMRPTS*DRVWISACE 383
AA RCF Q T+S ++P WS RP + + + C+
Sbjct: 49 AAARCFATQPATSSLRDSSPNWSN--RPPK-ETILLDGCD 85
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +1
Query: 199 IVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDCNWDSDQV 360
++ W +F+ + K R + D + K + +I+ + HDDI+ C + S ++
Sbjct: 2833 VMIWHAFRGKSADKKSRNANYDLSTKDHVIIESPYHILCGHDDIITCLFVSTEL 2886
>09_02_0109 - 4372621-4373024,4373498-4373760,4373988-4374157
Length = 278
Score = 27.1 bits (57), Expect = 9.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 395 NPNAISTRWAHCSRPSRGC 451
+P ++ WAHC P GC
Sbjct: 150 HPESVVAWWAHCCAPQGGC 168
>07_03_0632 - 20112297-20116562
Length = 1421
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 295 FCKGLEIAHDDILDCNWDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLN 474
+ K +EI+H L Q+ HL ++I H+ S +D++S ++ T K L L
Sbjct: 954 YIKVIEISHCTELQVLPPFGQLEHLRKLILHELPSMKDVSS--DVYGTSNVAFKSLEILC 1011
Query: 475 FDN 483
F++
Sbjct: 1012 FES 1014
>07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = -1
Query: 393 LLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVVHV 250
LL+ + ++NL+ V I Y + ++++ ++ + F V+VH+
Sbjct: 985 LLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHL 1032
>03_06_0389 - 33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = -1
Query: 393 LLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVVHV 250
LL+ + ++NL+ V I Y + ++++ ++ + F V+VH+
Sbjct: 971 LLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHL 1018
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,845,623
Number of Sequences: 37544
Number of extensions: 199197
Number of successful extensions: 497
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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