Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29f18
         (668 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase ...    29   5.7  
AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p pro...    29   5.7  
AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA...    29   5.7  
AY119029-1|AAM50889.1|  507|Drosophila melanogaster LP05465p pro...    29   7.6  
AE014134-2443|AAF53364.2|  620|Drosophila melanogaster CG8942-PA...    29   7.6  
BT010055-1|AAQ22524.1|  954|Drosophila melanogaster LD16082p pro...    28   10.0 
AF160879-1|AAD46820.1|  402|Drosophila melanogaster GH07762p pro...    28   10.0 
AF140746-1|AAF22575.1|  954|Drosophila melanogaster Ral guanine ...    28   10.0 
AE014298-2363|AAF48588.1| 1061|Drosophila melanogaster CG13957-P...    28   10.0 
AE014296-2321|AAF49790.2|  954|Drosophila melanogaster CG8865-PA...    28   10.0 
AE014134-2437|AAF53360.2|  402|Drosophila melanogaster CG33119-P...    28   10.0 

>AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 390 IKNKITS-AVVETVLDCGMFFSSLGLHAASPDAYFSLADGTWIPVEIKCPYNYRDTTVEQ 566
           +K K++S  +  + +D  MFF S G +      YF L   + +   I  P NY     E+
Sbjct: 403 LKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSINHPNNY----FEE 458

Query: 567 MRVELGNGNRK 599
            ++ +GN  ++
Sbjct: 459 SQIAMGNRQKR 469


>AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 390 IKNKITS-AVVETVLDCGMFFSSLGLHAASPDAYFSLADGTWIPVEIKCPYNYRDTTVEQ 566
           +K K++S  +  + +D  MFF S G +      YF L   + +   I  P NY     E+
Sbjct: 403 LKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSINHPNNY----FEE 458

Query: 567 MRVELGNGNRK 599
            ++ +GN  ++
Sbjct: 459 SQIAMGNRQKR 469


>AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 390 IKNKITS-AVVETVLDCGMFFSSLGLHAASPDAYFSLADGTWIPVEIKCPYNYRDTTVEQ 566
           +K K++S  +  + +D  MFF S G +      YF L   + +   I  P NY     E+
Sbjct: 403 LKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSINHPNNY----FEE 458

Query: 567 MRVELGNGNRK 599
            ++ +GN  ++
Sbjct: 459 SQIAMGNRQKR 469


>AY119029-1|AAM50889.1|  507|Drosophila melanogaster LP05465p
           protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 642 CLSC*PTARCVSRDTCDCRSPTRHASAPRSCLGNCT 535
           C  C   A CV+ + C+C      + A + C+  C+
Sbjct: 277 CEKCSDNAHCVAPNQCECFPGYESSGADKKCVPKCS 312


>AE014134-2443|AAF53364.2|  620|Drosophila melanogaster CG8942-PA
           protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 642 CLSC*PTARCVSRDTCDCRSPTRHASAPRSCLGNCT 535
           C  C   A CV+ + C+C      + A + C+  C+
Sbjct: 277 CEKCSDNAHCVAPNQCECFPGYESSGADKKCVPKCS 312


>BT010055-1|AAQ22524.1|  954|Drosophila melanogaster LD16082p
           protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 289 DELDDADAVLRSKRNSVHSSFLLCPLVAFSTRKISARSK 173
           D+LD + AVL ++R  V S   LC     + R +S ++K
Sbjct: 140 DDLDVSSAVLNAERKVVASLKYLCACTGATLRNLSKKTK 178


>AF160879-1|AAD46820.1|  402|Drosophila melanogaster GH07762p
           protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 615 CVSRDTCDCRSPTRHASAPRSCLGNCTD 532
           C SR  C CR   R+     SCL  C+D
Sbjct: 257 CESRYKCHCREGYRYDVNTTSCLPECSD 284


>AF140746-1|AAF22575.1|  954|Drosophila melanogaster Ral guanine
           nucleotide exchangefactor 2 protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 289 DELDDADAVLRSKRNSVHSSFLLCPLVAFSTRKISARSK 173
           D+LD + AVL ++R  V S   LC     + R +S ++K
Sbjct: 140 DDLDVSSAVLNAERKVVASLKYLCACTGATLRNLSKKTK 178


>AE014298-2363|AAF48588.1| 1061|Drosophila melanogaster CG13957-PA
           protein.
          Length = 1061

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 275 IVQFVRQHVTTTSAFVWKRTRKSR-QRNQRHHV-RPHARNYKK*NYER 412
           I QF+RQ   T S F+     KSR  +  R H    H+++Y+   YER
Sbjct: 767 IYQFLRQKFYTFSTFLHDEQIKSRLLKELRFHTEHKHSKSYQSYPYER 814


>AE014296-2321|AAF49790.2|  954|Drosophila melanogaster CG8865-PA,
           isoform A protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 289 DELDDADAVLRSKRNSVHSSFLLCPLVAFSTRKISARSK 173
           D+LD + AVL ++R  V S   LC     + R +S ++K
Sbjct: 140 DDLDVSSAVLNAERKVVASLKYLCACTGATLRNLSKKTK 178


>AE014134-2437|AAF53360.2|  402|Drosophila melanogaster CG33119-PA
           protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 615 CVSRDTCDCRSPTRHASAPRSCLGNCTD 532
           C SR  C CR   R+     SCL  C+D
Sbjct: 257 CESRYKCHCREGYRYDVNTTSCLPECSD 284


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,072,396
Number of Sequences: 53049
Number of extensions: 711310
Number of successful extensions: 1888
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)