Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29f15
         (343 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4XLJ3 Cluster: 2-C-methyl-D-erythritol 4-phosphate cyt...    33   0.95 
UniRef50_A2EDL6 Cluster: Surface antigen BspA-like; n=1; Trichom...    33   1.2  
UniRef50_A0DWV9 Cluster: Chromosome undetermined scaffold_67, wh...    32   2.9  
UniRef50_A6YQV8 Cluster: Beta-1,3(4)-glucanase LIC1; n=1; Peripl...    31   3.8  
UniRef50_Q2GMV7 Cluster: Putative uncharacterized protein; n=2; ...    31   3.8  
UniRef50_Q9N2W3 Cluster: Putative uncharacterized protein; n=2; ...    31   5.0  
UniRef50_Q7SCE7 Cluster: Predicted protein; n=2; Sordariomycetes...    31   5.0  
UniRef50_A7CTH6 Cluster: NAD(+)--dinitrogen-reductase ADP-D-ribo...    30   8.8  
UniRef50_A4A1D0 Cluster: Phosphoribosylglycinamide formyltransfe...    30   8.8  

>UniRef50_A4XLJ3 Cluster: 2-C-methyl-D-erythritol 4-phosphate
           cytidylyltransferase precursor; n=1;
           Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
           2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
           precursor - Caldicellulosiruptor saccharolyticus (strain
           ATCC 43494 / DSM 8903)
          Length = 224

 Score = 33.5 bits (73), Expect = 0.95
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 103 AGSGRLFGGARSRGCTVHFNVSVYEYGVCVGESCPFI 213
           AGSG+ FGG+  +      +  V EY +CV E+ PFI
Sbjct: 10  AGSGKRFGGSTPKQFLFLEDKMVIEYSLCVFENSPFI 46


>UniRef50_A2EDL6 Cluster: Surface antigen BspA-like; n=1;
           Trichomonas vaginalis G3|Rep: Surface antigen BspA-like
           - Trichomonas vaginalis G3
          Length = 637

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = -3

Query: 341 FFLKRRDIINLIYVKLYKYIHNLDKILFYIRHRPPFTGSGKHC 213
           + ++ +D  +++YV  +K  ++L K++F +  +PP TG    C
Sbjct: 176 YIMQLKDREDIVYVAPFKCCNDLTKVVFKVTSQPPMTGFFDQC 218


>UniRef50_A0DWV9 Cluster: Chromosome undetermined scaffold_67, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_67,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 380

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 341 FFLKRRDIINLIYVKLYKYIHNLDKILFYIRHRPPFTGSGKH 216
           F  +++D+   +  + YKYIHN+DK++     R  FTG   H
Sbjct: 186 FIKEQQDVDKPVRPRCYKYIHNMDKLVI----RNCFTGGSLH 223


>UniRef50_A6YQV8 Cluster: Beta-1,3(4)-glucanase LIC1; n=1;
           Periplaneta americana|Rep: Beta-1,3(4)-glucanase LIC1 -
           Periplaneta americana (American cockroach)
          Length = 342

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 105 WEW*AFWRRPKSWVYG 152
           W W A W  PK+WVYG
Sbjct: 141 WIWPAIWMLPKNWVYG 156


>UniRef50_Q2GMV7 Cluster: Putative uncharacterized protein; n=2;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 1114

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 302 VKLYKYIHNLDKILFYIRHRPPFTGSGKHCIKGQLSP-THTPYS 174
           V ++   H ++  +FY +H PP+ GSG  C + +++  T T +S
Sbjct: 669 VPIFYVFHLMECEVFY-KHHPPYEGSGDRCSRNEIAAGTATQFS 711


>UniRef50_Q9N2W3 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 498

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +1

Query: 67  PCRTLRHCG-CGRAGSGRLFGGARSRGCTVHFNVSVYEYG--VCV-GESCP 207
           P   L+HC  CG AG+   +GG    GC + F+ +V      VC  G  CP
Sbjct: 63  PPPKLKHCEVCGNAGATSHYGGTVCGGCKIFFSRTVQSRKGFVCERGGQCP 113


>UniRef50_Q7SCE7 Cluster: Predicted protein; n=2;
           Sordariomycetes|Rep: Predicted protein - Neurospora
           crassa
          Length = 591

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 260 FYIRHRPPFTGSGKHCIKGQLSP-THTPYSYTLTLKCTV 147
           FY RH PP+ GSG  C + +++  T T +S+ L +  T+
Sbjct: 108 FYTRH-PPYAGSGDRCSRNEIAAGTATDFSF-LAMSTTI 144


>UniRef50_A7CTH6 Cluster: NAD(+)--dinitrogen-reductase
           ADP-D-ribosyltransferase; n=1; Opitutaceae bacterium
           TAV2|Rep: NAD(+)--dinitrogen-reductase
           ADP-D-ribosyltransferase - Opitutaceae bacterium TAV2
          Length = 159

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 225 WQTLYKGTTFPDTYTVLIHTHIK 157
           W TLY+GT  PD YT++ H  ++
Sbjct: 52  WITLYRGTHDPDEYTLIPHPALR 74


>UniRef50_A4A1D0 Cluster: Phosphoribosylglycinamide
           formyltransferase; n=1; Blastopirellula marina DSM
           3645|Rep: Phosphoribosylglycinamide formyltransferase -
           Blastopirellula marina DSM 3645
          Length = 213

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +1

Query: 19  HVVE*SSFDVWSFNKRPCRTLRHCGCGRAGS----GRLFGGARSRGCTVHFNVSVYEYGV 186
           HV+    F+    N  P      CG G  G+      L  G +  GCTVH   + Y++G 
Sbjct: 102 HVLIPDDFENRVINIHPSLVPSFCGAGFYGAKVHQAALDYGVKVSGCTVHLVDNHYDHGP 161

Query: 187 CVGESCPFIQCLPD 228
            V +    I  LPD
Sbjct: 162 VVAQQS--IPVLPD 173


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 333,709,834
Number of Sequences: 1657284
Number of extensions: 6185372
Number of successful extensions: 13959
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13958
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10275329640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)