Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29f15
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   5.6  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      23   9.8  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    23   9.8  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    23   9.8  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    23   9.8  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 227  SGKHCIKGQLSPTHTPYSYTLTL 159
            SG  C KGQL+ TH    + L L
Sbjct: 1818 SGLPCFKGQLTITHCLERFALNL 1840


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 196 ESCPFIQCLPDPVKGGRCLI*NKILSKLC 282
           ESC  +Q  P  +K G CLI +      C
Sbjct: 404 ESCIRVQNAPSLIKCGVCLIISSTTPSFC 432


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 72  PHPAPLRLW*GWEW*AFW 125
           P P   R+W  W + AFW
Sbjct: 46  PVPKSQRVWGPWNYVAFW 63


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 341 FFLKRRDIINLIYVKLYKYIHNLDKIL 261
           FFL  R    L+Y  +Y+Y++N ++ L
Sbjct: 524 FFLPSRSP-KLVYQGIYRYVNNPERFL 549


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 77  VRQGRLLKDQTSKEDHSTTWTFY 9
           V+QG++ K+  SK D+S   T +
Sbjct: 84  VQQGKITKESISKRDYSHEITIF 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,371,858
Number of Sequences: 5004
Number of extensions: 25310
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)