Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29f15
         (343 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0051 + 9324941-9325192,9326033-9326305                           33   0.059
12_02_0197 + 15392427-15392617,15392743-15393271                       30   0.55 
09_05_0008 + 20042390-20042845,20043323-20043457,20043539-200436...    29   1.3  
02_05_1113 + 34207997-34208380                                         29   1.3  
03_05_0292 + 22846273-22846377,22847161-22847823                       27   3.9  
07_03_0382 + 17470508-17470807,17471449-17474517                       27   5.1  
05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450...    27   5.1  
03_02_0647 + 10154668-10156041                                         26   6.7  
10_05_0053 + 8602142-8603581                                           26   8.9  

>11_03_0051 + 9324941-9325192,9326033-9326305
          Length = 174

 Score = 33.1 bits (72), Expect = 0.059
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +1

Query: 55  FNKRPCRTLRHCGCGRAGSGRLFGGARSRGCTVHFNVSVYEYGVCVGESCPFIQCLP 225
           F+K P    R  GC + G     GG R R  T+ F VS      CVG +   ++ LP
Sbjct: 82  FHKAPAAMQRTAGC-KIGGIEDMGGGRRRVGTLTFGVSFKINDACVGATPDLVEPLP 137


>12_02_0197 + 15392427-15392617,15392743-15393271
          Length = 239

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 82  RHCGCGRAGSGRLFGGARSRGCTV--HFNVSVYEYGVCVGESCPFIQCLPDPVKGG 243
           R CGC   G G    G R R C V  H  +    +GV  G   P  QCL + ++ G
Sbjct: 74  RGCGCCGYGGGGC--GDRGRYCGVRRHGGLGWLAWGVADGRIWPARQCLEEGLEAG 127


>09_05_0008 +
           20042390-20042845,20043323-20043457,20043539-20043679,
           20043771-20043882,20044084-20044154,20044251-20044405,
           20044484-20044595,20044932-20045033,20045116-20045176,
           20045251-20045422,20045512-20045608,20045692-20045786,
           20045881-20046014,20046208-20046422
          Length = 685

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 91  GCGRAGSGRLFGGARSRG 144
           G GR G GR FGG R RG
Sbjct: 657 GGGRGGGGRGFGGGRGRG 674


>02_05_1113 + 34207997-34208380
          Length = 127

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 64  RPCRTLRHCGCGRAGSGR-LFGGARSR 141
           RP RT R   C   GSGR   GG RS+
Sbjct: 78  RPARTARRAACAEDGSGRGQHGGRRSQ 104


>03_05_0292 + 22846273-22846377,22847161-22847823
          Length = 255

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 49  WSFNKRPCRTLRHC-GCGRAGSG-RLFGGARSRGCTVHF 159
           WS+ +R  R  R C G GR G G    GG  + GC   F
Sbjct: 165 WSWRRRRRRRSRMCGGGGRRGRGSSTQGGGDACGCMAEF 203


>07_03_0382 + 17470508-17470807,17471449-17474517
          Length = 1122

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 196 ESCPFIQCLPDPVKGGRCL 252
           ESCP ++CLP+ +K  R L
Sbjct: 862 ESCPKLKCLPEGLKYSRVL 880


>05_01_0522 -
           4506667-4507254,4507474-4507824,4507967-4508163,
           4508324-4508582,4508656-4508868,4508946-4509071,
           4509159-4509296,4509376-4509721,4509822-4510088,
           4510427-4510616,4510700-4510784,4510885-4511072,
           4511262-4511457,4512027-4512113
          Length = 1076

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 102 GWEW*AFWRRPKSWVYGTFXXXXXXXXXXXX-GKLSLYTMFARPCKGGS 245
           G+E    W +   W+YG+              G +S+Y M  RPC  GS
Sbjct: 754 GYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPCFKGS 802


>03_02_0647 + 10154668-10156041
          Length = 457

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 329 RRDIINLIYVKLYKYIHNLDKILFYIRHRPPFT 231
           RR  + +  V    Y + +D I+F+++ +PPF+
Sbjct: 411 RRARLAVASVAAVMYSYLIDSIIFWVQFKPPFS 443


>10_05_0053 + 8602142-8603581
          Length = 479

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 97  GRAGSGRLFGGA-RSRGCTVHFNVSVYEYGVCVGESCPFIQC 219
           G  G G + GGA    GC +H  V +  +  C  E+   ++C
Sbjct: 41  GGGGGGGVGGGAVEDDGCPLHDEVLLLVFAECSLETDDLVRC 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,380,820
Number of Sequences: 37544
Number of extensions: 190795
Number of successful extensions: 460
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)