Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29f15
(343 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024876-12|AAF60896.2| 498|Caenorhabditis elegans Hypothetical... 31 0.22
Z70204-4|CAA94114.2| 437|Caenorhabditis elegans Hypothetical pr... 28 1.5
AY305832-1|AAR11977.1| 437|Caenorhabditis elegans nuclear recep... 28 1.5
AY305831-1|AAR11976.1| 437|Caenorhabditis elegans nuclear recep... 28 1.5
AF273774-1|AAG15123.1| 433|Caenorhabditis elegans nuclear recep... 28 1.5
Z70782-10|CAN86639.1| 456|Caenorhabditis elegans Hypothetical p... 27 2.7
Z70782-9|CAA94840.1| 453|Caenorhabditis elegans Hypothetical pr... 27 2.7
U97009-5|AAC69036.2| 505|Caenorhabditis elegans Nuclear hormone... 27 2.7
AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical... 27 4.7
AF016436-2|AAC25898.1| 406|Caenorhabditis elegans Hypothetical ... 27 4.7
AC006675-12|AAK84548.1| 418|Caenorhabditis elegans Nuclear horm... 27 4.7
Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical p... 26 6.1
AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical... 26 6.1
AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear recep... 26 6.1
AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear recep... 26 6.1
AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear recep... 26 6.1
Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical p... 26 8.1
Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical p... 26 8.1
Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical pr... 26 8.1
AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear recep... 26 8.1
AC006627-5|AAO38662.1| 529|Caenorhabditis elegans Hypothetical ... 26 8.1
AC006627-4|AAK85459.1| 712|Caenorhabditis elegans Hypothetical ... 26 8.1
>AC024876-12|AAF60896.2| 498|Caenorhabditis elegans Hypothetical
protein Y94H6A.1 protein.
Length = 498
Score = 31.1 bits (67), Expect = 0.22
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +1
Query: 67 PCRTLRHCG-CGRAGSGRLFGGARSRGCTVHFNVSVYEYG--VCV-GESCP 207
P L+HC CG AG+ +GG GC + F+ +V VC G CP
Sbjct: 63 PPPKLKHCEVCGNAGATSHYGGTVCGGCKIFFSRTVQSRKGFVCERGGQCP 113
>Z70204-4|CAA94114.2| 437|Caenorhabditis elegans Hypothetical
protein C11G6.4a protein.
Length = 437
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSV 171
CG AG G FG R C F SV
Sbjct: 11 CGEAGDGAHFGAEACRACAAFFRRSV 36
>AY305832-1|AAR11977.1| 437|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 437
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSV 171
CG AG G FG R C F SV
Sbjct: 11 CGEAGDGAHFGAEACRACAAFFRRSV 36
>AY305831-1|AAR11976.1| 437|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 437
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSV 171
CG AG G FG R C F SV
Sbjct: 11 CGEAGDGAHFGAEACRACAAFFRRSV 36
>AF273774-1|AAG15123.1| 433|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 433
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSV 171
CG AG G FG R C F SV
Sbjct: 7 CGEAGDGAHFGAEACRACAAFFRRSV 32
>Z70782-10|CAN86639.1| 456|Caenorhabditis elegans Hypothetical
protein R04B5.4b protein.
Length = 456
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSV---YEYGVCVGESCPF---IQCLPDPVKGGRCL 252
C G G FG R CT F SV +Y G +C I+C+ + +C+
Sbjct: 50 CNEVGDGLHFGAEACRACTAFFRRSVALSKKYECRAGRNCEVSSNIRCMCRSCRYDKCI 108
>Z70782-9|CAA94840.1| 453|Caenorhabditis elegans Hypothetical
protein R04B5.4a protein.
Length = 453
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSV---YEYGVCVGESCPF---IQCLPDPVKGGRCL 252
C G G FG R CT F SV +Y G +C I+C+ + +C+
Sbjct: 50 CNEVGDGLHFGAEACRACTAFFRRSVALSKKYECRAGRNCEVSSNIRCMCRSCRYDKCI 108
>U97009-5|AAC69036.2| 505|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 220 protein.
Length = 505
Score = 27.5 bits (58), Expect = 2.7
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +1
Query: 67 PCRTLRHCGCGRAGSGRLFGGARSRGCTVHFN-VSVYEYGVCVG-ESCP--FIQCLPDPV 234
PCR CG+ G FG R C F V G+ + SC F++CL
Sbjct: 111 PCRI-----CGKKAHGTHFGVFSCRACAAFFRLVFSLILGMAISFRSCMEIFVKCLAKGG 165
Query: 235 KGGRCL 252
G CL
Sbjct: 166 SGNECL 171
>AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical
protein F48G7.11 protein.
Length = 405
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSVYEYG-----VCVGESCPF---IQC 219
CG+ GR FG R C F +V VC ESC IQC
Sbjct: 14 CGQPSHGRHFGVLSCRACAAFFRRAVMRSAKSQDMVCERESCSLKDRIQC 63
>AF016436-2|AAC25898.1| 406|Caenorhabditis elegans Hypothetical
protein F38H12.3 protein.
Length = 406
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 34 SSFDVWSFNKRPCRTLRHCG-CGRAGSGRLFGGARSRGCTVHFNVSV 171
SS S + P + C CG + +G+ +G GC V F +V
Sbjct: 15 SSVSTSSMSSSPSTSSESCAVCGDSVNGKRYGAPACLGCIVFFRRAV 61
>AC006675-12|AAK84548.1| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 99 protein.
Length = 418
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 67 PCRTLRHCG-CGRAGSGRLFGGARSRGCTVHF 159
P R++R C C + G+ FG R C + F
Sbjct: 19 PTRSMRTCEICDKPSHGKHFGAVTCRACAMFF 50
>Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSV 171
CG G+G FG R C F SV
Sbjct: 14 CGEVGNGVHFGAEACRACAAFFRRSV 39
>AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSV 171
CG G+G FG R C F SV
Sbjct: 14 CGEVGNGVHFGAEACRACAAFFRRSV 39
>AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 388
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSV 171
CG G+G FG R C F SV
Sbjct: 13 CGEVGNGVHFGAEACRACAAFFRRSV 38
>AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 387
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSV 171
CG G+G FG R C F SV
Sbjct: 12 CGEVGNGVHFGAEACRACAAFFRRSV 37
>AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 383
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSV 171
CG G+G FG R C F SV
Sbjct: 8 CGEVGNGVHFGAEACRACAAFFRRSV 33
>Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical
protein B0024.3 protein.
Length = 254
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 97 GRAGSGRLFGGARSRGCTVHFNVSVYEYGVCVGES 201
GR G G FG R G + SVY G G S
Sbjct: 31 GRGGGGARFGVGRGGGASTVRGSSVYSGGFRTGTS 65
>Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSVYEYG--VC-VGESCPFIQ 216
CG + +GR +G GC F S++E VC G C +Q
Sbjct: 154 CGDSRAGRHYGTIACNGCKGFFRRSIWEQRDYVCRFGGKCLVVQ 197
>Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSVYEYG--VC-VGESCPFIQ 216
CG + +GR +G GC F S++E VC G C +Q
Sbjct: 136 CGDSRAGRHYGTIACNGCKGFFRRSIWEQRDYVCRFGGKCLVVQ 179
>Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSVYEYG--VC-VGESCPFIQ 216
CG + +GR +G GC F S++E VC G C +Q
Sbjct: 154 CGDSRAGRHYGTIACNGCKGFFRRSIWEQRDYVCRFGGKCLVVQ 197
>Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSVYEYG--VC-VGESCPFIQ 216
CG + +GR +G GC F S++E VC G C +Q
Sbjct: 136 CGDSRAGRHYGTIACNGCKGFFRRSIWEQRDYVCRFGGKCLVVQ 179
>Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical
protein F58G6.5a protein.
Length = 499
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSVYEYG--VC-VGESCPFIQ 216
CG + +GR +G GC F S++E VC G C +Q
Sbjct: 22 CGDSRAGRHYGTIACNGCKGFFRRSIWEQRDYVCRFGGKCLVVQ 65
>AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear receptor
NHR-34 protein.
Length = 509
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 94 CGRAGSGRLFGGARSRGCTVHFNVSVYEYG--VC-VGESCPFIQ 216
CG + +GR +G GC F S++E VC G C +Q
Sbjct: 32 CGDSRAGRHYGTIACNGCKGFFRRSIWEQRDYVCRFGGKCLVVQ 75
>AC006627-5|AAO38662.1| 529|Caenorhabditis elegans Hypothetical
protein E01A2.2b protein.
Length = 529
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 34 SSFDVWSFNKRPCRTLRHCGCGRAGSGRLFGGARSR 141
+SF +++RP RH GR G GR F A R
Sbjct: 479 NSFGGGGYDRRPQFPPRHSLGGRGGGGRYFEDAPRR 514
>AC006627-4|AAK85459.1| 712|Caenorhabditis elegans Hypothetical
protein E01A2.2a protein.
Length = 712
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 34 SSFDVWSFNKRPCRTLRHCGCGRAGSGRLFGGARSR 141
+SF +++RP RH GR G GR F A R
Sbjct: 662 NSFGGGGYDRRPQFPPRHSLGGRGGGGRYFEDAPRR 697
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,730,011
Number of Sequences: 27780
Number of extensions: 149179
Number of successful extensions: 495
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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