Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29f06
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   134   1e-32
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   5.0  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   6.5  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  134 bits (324), Expect = 1e-32
 Identities = 71/161 (44%), Positives = 91/161 (56%)
 Frame = -2

Query: 551 YVLP*GQISFWGATVITNLLSAIPYLGTILVN*I*GGFAVDNATLTRFYTXXXXXXXXXX 372
           Y LP  Q+SFWGATVITNLLSA+P++G  LV+ + GGF+V N TL RF++          
Sbjct: 132 YCLPANQMSFWGATVITNLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSLHYLMPFVIA 191

Query: 371 XXXXXXXXXXHQTGSNNPLGLNRNLDKIPFHPFFTFKDXXXXXXXXXXXXXXXXINPYLL 192
                     H  GS+NPLG+  N+D+IP +P++  KD                 NPY  
Sbjct: 192 ALSVMHLIALHTNGSSNPLGVTANMDRIPMNPYYLIKDLITIFIFLIGINYMAFYNPYGF 251

Query: 191 GDPDNFTPANPLVTPVHIQPE*YFLXAYAILRSIPNKLGGV 69
            +PD   PA+PL TP+ I PE Y L  YAILR+IPN   GV
Sbjct: 252 MEPDCALPADPLKTPMSIVPEWYLLPFYAILRAIPNFQLGV 292


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 573 NSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFR 472
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -1

Query: 594 NYNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLR 445
           +Y F + N      + L+  S + L  +   + I+CN L R+ +   N +
Sbjct: 47  SYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,997
Number of Sequences: 5004
Number of extensions: 25690
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)