Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29e19
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   3.6  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   3.6  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   3.6  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   3.6  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   3.6  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/31 (22%), Positives = 19/31 (61%)
 Frame = +3

Query: 114  WVYLQETLKMERKFLYNDVPSATLLKLVANT 206
            W  +  ++KM+R+F+  ++  +++ +L   T
Sbjct: 1544 WTLVSNSVKMQRRFVVTNLQPSSVYQLKVET 1574


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/31 (22%), Positives = 19/31 (61%)
 Frame = +3

Query: 114  WVYLQETLKMERKFLYNDVPSATLLKLVANT 206
            W  +  ++KM+R+F+  ++  +++ +L   T
Sbjct: 1540 WTLVSNSVKMQRRFVVTNLQPSSVYQLKVET 1570


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/31 (22%), Positives = 14/31 (45%)
 Frame = +3

Query: 6   CDSNATIHVVSIKCLKFGDFGRPKKFGCYIN 98
           C       +  ++  ++G+F   +K  CY N
Sbjct: 43  CIGETKTTIEDVEATEYGEFPEDEKLKCYFN 73


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +3

Query: 60  DFGRPKKFGCYIN---YKNLKWVYLQETLKMERKFL 158
           DFGRP  F C +     K + W+   + L +E   L
Sbjct: 320 DFGRPATFTCNVRGNPIKTVSWLKDGKPLGLEEAVL 355


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 261 PAAWPVFRPKNPCRFGPTL 205
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 261 PAAWPVFRPKNPCRFGPTL 205
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 261 PAAWPVFRPKNPCRFGPTL 205
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 261 PAAWPVFRPKNPCRFGPTL 205
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 261 PAAWPVFRPKNPCRFGPTL 205
           P ++P F P N  RF P+L
Sbjct: 370 PTSFPRFIPPNAYRFRPSL 388


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 200 KHKVGPNLHGFFGRKTGQAAGFSYSDANKA 289
           KH +  +L   FG K  +    SYS  NK+
Sbjct: 1   KHHLEYHLRNHFGSKPFKCEKCSYSCVNKS 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,376
Number of Sequences: 438
Number of extensions: 4616
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)