Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29e17
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 29 0.55
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 28 1.3
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 28 1.3
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 27 2.9
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 26 3.9
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 3.9
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 25 6.8
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 6.8
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 25 9.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.0
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 29.1 bits (62), Expect = 0.55
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 157 EAQKSLDKIFLMTYDFKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAV 14
E +KSL K + +D G+ +G A SWN+E + H A+
Sbjct: 168 ETKKSLPKQTIHVHDISGSAMIVLIGESQVKSALSWNNETILLIHNAI 215
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 360 STSIGNFRAAKGLTRRWAMRSVTPKHTFCCWMSCAKC*TTSKCKPAG 220
S ++G+ G T W M ++PK T+ + A T S P G
Sbjct: 426 SQNVGDIEIGLGNTNSWKMCGISPKSTYAIYFEVA---TQSASAPQG 469
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 317 RVSPFAARKFPIDVDTIK-KFPHLQKFLNRLYKNVSFFNVVHEIERVR 457
R P + F ++ TI+ +PH+ ++L RLY F+ + + ++
Sbjct: 239 RFDPVYVQHFKCNIGTIRHNYPHINQWLKRLYWKHPAFHETTDFKHIK 286
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 341 KFPIDVDTIKKFPHLQKFLNRLYKNVSFFNVVHEIER 451
K+ I D IKKF +K L N F+ +H I +
Sbjct: 410 KYIIPTDYIKKFLTAKKLFTDLPSNNELFSFIHNIPK 446
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 3/22 (13%)
Frame = +2
Query: 392 FLNRLYKNVSFFNV---VHEIE 448
FL+++Y+NVS FNV +H+IE
Sbjct: 37 FLSKIYENVSNFNVPRKLHDIE 58
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 413 NVSFFNVVHEIERVRQS 463
N +F N VHE+ER+R+S
Sbjct: 561 NRNFANYVHEVERLRES 577
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 583 KNPQKGVSAWNEPYKGNFGQLMA-AKLANPHLKILPSIGG 467
K+ + G+SA N +KG G A A LA+P + +I G
Sbjct: 449 KDGEVGISATNRNFKGRMGSREALAYLASPAVVAASAIAG 488
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 472 GGWTLSDPFYF--MHDVEKRNVFVES-VKEFLQVWKFFDGVDV 353
G + +D F F +V RNV VKE +++++ + G+DV
Sbjct: 572 GSYQSNDVFGFPLQLNVRSRNVLTNDLVKEIVELYRVYAGIDV 614
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 327 PLPPGNSQSTSTPSKN 374
PLPP N QS S+ S+N
Sbjct: 250 PLPPSNVQSNSSSSEN 265
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 587 VQKPPKGRVRLERTVQR 537
V+KPPK V ++R+VQR
Sbjct: 16 VEKPPKQLVEVKRSVQR 32
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 330 LPPGNSQSTSTPSKNFHTCKNSLTDSTKTFLFSTSC 437
+PP ++ STSTP T T S+ STSC
Sbjct: 359 VPPTSTSSTSTPPPPASTSSTG-TSSSPLLSTSTSC 393
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,722
Number of Sequences: 5004
Number of extensions: 58120
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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