Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29e17
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 34 0.11
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364... 34 0.11
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 34 0.11
10_08_0007 + 14044844-14045767 33 0.25
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 30 1.3
01_03_0102 - 12565917-12566258 29 2.3
02_02_0402 - 9852407-9853519 29 4.0
07_03_0632 - 20112297-20116562 28 5.3
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 5.3
01_01_0201 + 1746088-1747086,1748735-1748806,1750106-1750168,175... 28 5.3
11_04_0234 + 15187065-15188241,15188316-15188494 28 7.0
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 27 9.2
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 418 FFFQRRA*NR-TGPTESSLLLKEEFLDVGLLISPPSIVQNCLCTVRSKRTRPF 573
F+++ R + GP SL K+ +D+ L PP+ + N +C + KR+R +
Sbjct: 299 FWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKGKRSRNY 351
>11_06_0460 +
23836034-23836083,23836175-23836318,23836397-23836480,
23836695-23836838,23836928-23836978,23837070-23837150,
23837366-23837509,23837599-23837649,23837738-23838056,
23839994-23840062,23840378-23840698,23841218-23841583,
23842241-23842304,23842569-23842690
Length = 669
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 418 FFFQRRA*NR-TGPTESSLLLKEEFLDVGLLISPPSIVQNCLCTVRSKRTRPF 573
F+++ R + GP SL K+ +D+ L PP+ + N +C + KR+R +
Sbjct: 299 FWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKGKRSRNY 351
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 418 FFFQRRA*NR-TGPTESSLLLKEEFLDVGLLISPPSIVQNCLCTVRSKRTRPF 573
F+++ R + GP SL K+ +D+ L PP+ + N +C + KR+R +
Sbjct: 299 FWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKGKRSRNY 351
>10_08_0007 + 14044844-14045767
Length = 307
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Frame = -2
Query: 511 KLANPHLKILPSIGGWTLSD-PFYF-MHDVEK-RNVFVESVKEFLQVWKFFDGVDVDWE 344
K +NP++++ S+GG T++D P +F + V+ N VES+ +Q DG+D+D+E
Sbjct: 97 KQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQD-NNLDGIDIDYE 154
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 359 DTIKKFPHLQKFLNRLYKNVSFFNVVHEIERVRQS 463
DT++ F LQ +R K ++F ++VH I R+ Q+
Sbjct: 143 DTMELFMELQVIGDRAVKKLAFSHIVHSIRRMNQT 177
>01_03_0102 - 12565917-12566258
Length = 113
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 373 FFDGVDVDWEFPGGKGANPSLG 308
F+ G +++W FPG G P +G
Sbjct: 55 FYPGPNINWVFPGPNGVTPQVG 76
>02_02_0402 - 9852407-9853519
Length = 370
Score = 28.7 bits (61), Expect = 4.0
Identities = 26/83 (31%), Positives = 37/83 (44%)
Frame = +3
Query: 291 ASRSASPSDGLAPLPPGNSQSTSTPSKNFHTCKNSLTDSTKTFLFSTSCMK*NGSDRVQP 470
+S SA +DGL PP + +T+T SK ++ S ST + + + + P
Sbjct: 131 SSSSAVAADGLKLKPPPEAAATATSSKKRNSGPES--SSTASSKRPKTVHRQQNKSPLPP 188
Query: 471 PIEGRIFRCGFANFAAINCPKLP 539
P R R A FAAI P P
Sbjct: 189 PPPKRAAR---ARFAAIPLPPPP 208
>07_03_0632 - 20112297-20116562
Length = 1421
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Frame = +1
Query: 454 PTESSLLLKEEFLDV-GLLISPPSIVQ--------NCLCTVRSKRTRPFGGFCTAAHGSW 606
P ++SL+ K D+ G L++PP +++ CL R+ +T F G+ A W
Sbjct: 889 PLQASLVEKNYTSDISGYLMNPPEVIKPDQDMEILECLSPPRNLQTIKFFGYTGLAFPDW 948
Query: 607 MATLK 621
+ L+
Sbjct: 949 VVQLR 953
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 19 RNVSCTALPSSNLARRLLFGSPNPCL 96
RN SCTA +NL L G P+ CL
Sbjct: 1074 RNCSCTAYAYANLRTILTTGDPSRCL 1099
>01_01_0201 +
1746088-1747086,1748735-1748806,1750106-1750168,
1750355-1750489,1750604-1750669
Length = 444
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 300 SASPSDGLAPLPPGNSQSTSTPSKNFHTCKNSLTDSTK 413
SASP+ P P +S S+++ + H +S+ ++TK
Sbjct: 174 SASPASSATPTPTASSSSSTSAAPFAHPSPSSVLEATK 211
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 421 RNVFVESVKEFLQVWKFFDGVDVDWEFPGGKGANPSLGD 305
R F+ S E + FDG+D+ W FP + +LGD
Sbjct: 139 RRAFINSSIELARA-NGFDGLDLAWRFPATQLDMENLGD 176
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 294 SRSASPSDGLAPLPPGNSQSTSTP 365
S SPS G +P PG S STP
Sbjct: 413 SAPPSPSSGTSPTTPGGGYSPSTP 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,711,809
Number of Sequences: 37544
Number of extensions: 398078
Number of successful extensions: 1309
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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