Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29e16
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0138 + 12963464-12965059,12965085-12965660                       31   0.78 
12_01_0647 - 5485100-5487028                                           30   1.8  
11_06_0541 + 24771145-24775479                                         30   1.8  
01_06_0291 - 28236235-28236576,28236785-28236900,28237560-282377...    29   4.2  
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    27   9.7  

>01_03_0138 + 12963464-12965059,12965085-12965660
          Length = 723

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = -1

Query: 289 FTKKFFYLNITLC-----CHLARHLVVLMHMLQFMTTTYLYLIKRLSIYKYVYSHQNHSH 125
           F   F+Y  I+L      C +  HL   + ++  +T  ++Y  K++ I+       + + 
Sbjct: 332 FASDFYYSPISLSSFSGWCAVLNHLFSALIVVGAVTVGWIYRTKQVVIFD-----GSQAF 386

Query: 124 YPIVTVILLLSAIY 83
           Y IVTV+LLLS ++
Sbjct: 387 YYIVTVVLLLSVVF 400


>12_01_0647 - 5485100-5487028
          Length = 642

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = -1

Query: 181 LIKRLSIYKYVYSHQNHSHYPIVTVILLLSAIYAVNNYWNNRTISQ 44
           ++++++   Y  +H   +HY +   ++   ++  ++N W +R ISQ
Sbjct: 269 IVEQITCSPYKCAHGEETHYILRDKLMSTKSLLVLDNVWEDRDISQ 314


>11_06_0541 + 24771145-24775479
          Length = 1444

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 355 PRNFRPCVIVKKKHYAEVVKINSCKYLGQNFIQINRYILGPRNAEM*R 498
           P N   C I K K  A++ +  + K + QN +QI R +    N E+ R
Sbjct: 309 PVNAMKCYIYKMKKIADICRGYTFKRVFQNVVQIGRMVTQRLNGELER 356


>01_06_0291 -
           28236235-28236576,28236785-28236900,28237560-28237731,
           28238916-28239044,28239165-28239320
          Length = 304

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 370 PCVIVKKKHYAEVVKINSCKYLGQNFIQINRYILGPRNAEM*R 498
           P  I K+     +V + +C Y+GQ FI++  Y+    + E  R
Sbjct: 197 PSKIRKEDIIGVIVLLLTCSYMGQEFIRVGYYVNNDNDDEQLR 239


>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
            7535889-7535932,7536042-7536146,7536223-7536344,
            7536807-7536894,7536966-7537052,7537718-7537786,
            7537859-7538188,7539777-7539824,7540003-7540069,
            7540150-7540208,7541220-7541453,7541536-7541601,
            7541684-7541883,7542104-7542197,7542295-7542414,
            7542596-7542703,7542808-7542871,7543378-7543409,
            7546049-7548007
          Length = 1407

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 250  CHLARHLVVLMHMLQFMTTTYLYLIKRLSIYKY 152
            C   + ++V M ++QF+   Y+Y+   L I K+
Sbjct: 1047 CEKNKQIIVFMDVVQFLKPKYVYMENVLDILKF 1079


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,717,298
Number of Sequences: 37544
Number of extensions: 260974
Number of successful extensions: 462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)