Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29e16
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016428-1|AAO26001.1|  330|Caenorhabditis elegans Serpentine re...    29   2.8  
Z81571-6|CAB04616.1|  460|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    28   4.9  
Z68114-8|CAA92162.1|  317|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U64840-4|AAB04962.1|  316|Caenorhabditis elegans Serpentine rece...    27   8.6  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    27   8.6  
AC084158-20|AAK68572.1|  130|Caenorhabditis elegans Hypothetical...    27   8.6  
AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF016428-1|AAO26001.1|  330|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 66 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 25/95 (26%), Positives = 44/95 (46%)
 Frame = -1

Query: 346 RTPEMAKEFTNVQSL*QDCFTKKFFYLNITLCCHLARHLVVLMHMLQFMTTTYLYLIKRL 167
           R PE+ K  TN  ++    FT  +F   I +C    +  V++    Q ++  Y  + K+L
Sbjct: 177 RNPELVKTATNTTAI----FTIIYF---IIICVLGIKTSVIINKNKQALSAMYEKIAKKL 229

Query: 166 SIYKYVYSHQNHSHYPIVTVILLLSAIYAVNNYWN 62
           +    V       H  +   ILL S + ++N++WN
Sbjct: 230 THIAIV-------HCVVFAGILLWSVLTSLNSFWN 257


>Z81571-6|CAB04616.1|  460|Caenorhabditis elegans Hypothetical
           protein M01G12.7 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -2

Query: 540 TVWY*ANENASGDAASHLRVS-WSKNISIYLYKILSQIFTTVNFYNFSVMFFFNNNTRPK 364
           TV Y    +A  D  +H+ +  +   ++ +++K  SQ     +F++  +     +   P 
Sbjct: 182 TVLYTGELDAVDDRNNHVELKLFEGGLTEHVWKRRSQWMFWQSFFSNVLTLIIGSRNHPS 241

Query: 363 IARNCDARLKWPRN 322
           +    DA+  WP N
Sbjct: 242 LLEITDAKFDWPTN 255


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = -1

Query: 328 KEFTNVQSL*QDCFTKKFF---YLNITLCCHLARHLVVLMHMLQFMTTTYLYLIKRLSIY 158
           K F  V +   +C T       Y +ITL   +         +  FM T  L L+K+LSI 
Sbjct: 75  KHFLMVDAENSECVTSTSLWKIYFDITLWSIIIHFRRCASWLGIFMATVRLVLVKKLSIS 134

Query: 157 KYVYSHQNHSHYPIVTVILLLSAIYAV 77
           ++    +    + +  ++  LSA+ +V
Sbjct: 135 RFCNWSKPRVGWLMAVILFFLSALLSV 161


>Z68114-8|CAA92162.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.11 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 470 RIYLFICI-KFCPKYLQLLIFTTSA*CFFLTIT 375
           +I+LF+ + K+ PKY+Q L       C F TI+
Sbjct: 21  QIFLFVVVVKYSPKYMQTLRNVLFCNCIFQTIS 53


>U64840-4|AAB04962.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 68 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 27/95 (28%), Positives = 44/95 (46%)
 Frame = -1

Query: 346 RTPEMAKEFTNVQSL*QDCFTKKFFYLNITLCCHLARHLVVLMHMLQFMTTTYLYLIKRL 167
           R PE+  + TNV ++    FT  +F   I LC       V++    Q ++  Y  + K+L
Sbjct: 177 RNPEIIIKATNVTAV----FTVVYF---IILCVLGIITSVMIGKNKQALSAVYEKIAKKL 229

Query: 166 SIYKYVYSHQNHSHYPIVTVILLLSAIYAVNNYWN 62
           +    V       H  +   ILL S + ++N+YWN
Sbjct: 230 THIAIV-------HCVVFAGILLWSVLTSLNSYWN 257


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 400 AEVVKINSCKYLGQNFIQINRYILGPR 480
           AEVVK+   + LG+N+ +I++ I  P+
Sbjct: 187 AEVVKVGILRALGKNYKKISKKIFNPK 213


>AC084158-20|AAK68572.1|  130|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.27 protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 259 TLCCHLAR-HLVVLMHMLQFMTTTYLYLIKRLSIYKYVYSHQN 134
           T C  L + HL  L  +L F+T   +Y +K+ ++ +   +HQN
Sbjct: 87  THCLGLIQSHLSHLFVLLTFLTLKCIYFLKKKNLKRMKITHQN 129


>AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical
           protein Y76B12C.1 protein.
          Length = 832

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 181 LIKRLSIYKYVYSHQNHSHYPIVTVILLLSAIYAVNNYWN 62
           L+K   +Y+++   Q  + +P    IL L++  A+  +WN
Sbjct: 339 LVKAYRLYEFIMLTQRRTDFPHFMKILFLTSSCAILFHWN 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,709,776
Number of Sequences: 27780
Number of extensions: 271909
Number of successful extensions: 706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)