Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29e13
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0841 - 21749599-21749978,21750409-21753367                       29   2.6  
01_06_0153 - 27044553-27044669,27044842-27044964,27045066-270451...    28   7.9  

>08_02_0841 - 21749599-21749978,21750409-21753367
          Length = 1112

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 391 IIPDQFGKTNVLERYYNEEVRLTLPEGKRISRIKWFAVYDIDSQNAFGDV 540
           ++PD  G    LE  Y  + +L+    K +S IK   ++DI + +  G++
Sbjct: 201 VLPDSIGNCTKLEELYLLDNQLSGSLPKTLSYIKGLKIFDITANSFTGEI 250


>01_06_0153 -
           27044553-27044669,27044842-27044964,27045066-27045161,
           27045323-27045370,27046360-27046458,27046554-27046592,
           27047032-27047133,27047225-27047347,27047535-27047783
          Length = 331

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 328 GTGVDTFFWAGDSGRPGPQGFIIPDQFGKTNVLE 429
           G G  +F   GD       G++  D FG+ NVL+
Sbjct: 123 GKGTQSFCSGGDQALRDADGYVDFDSFGRLNVLD 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,489,258
Number of Sequences: 37544
Number of extensions: 420285
Number of successful extensions: 909
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)