Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29e12
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 69 3e-13
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 26 3.2
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 4.2
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho... 25 4.2
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 4.2
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 25 4.2
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 5.6
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 5.6
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 5.6
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 25 7.3
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c... 25 7.3
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 9.7
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 68.9 bits (161), Expect = 3e-13
Identities = 37/92 (40%), Positives = 53/92 (57%)
Frame = +1
Query: 184 AMVMEASPSPQSVGREFVRQYYTLLNKAPAHLHRFYNNYSSFIHGGLDAPNRETLPVVGQ 363
A ++E +G FV++YYT LNK P LH FY S+ IHG D +L GQ
Sbjct: 6 ATLLEPVLGKDEIGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHG--DEGESISL-CHGQ 62
Query: 364 KQIHNRIQQLNFRDCHAKISQVDAQATLGNGV 459
++IHN+I L+F++C IS VD+ A+ G+
Sbjct: 63 QEIHNKILDLDFQNCKVLISNVDSLASSNGGI 94
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 3.2
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 184 AMVMEASPSPQSVGREFVRQYYTLLNKAPAHLHRFYNNYSSFIHG 318
A +++ P+ + R + + Y + L F+N Y++FIHG
Sbjct: 436 ATIVQQIPTERIPFRSWGQPYIAYASLIFTGLITFFNGYNAFIHG 480
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 4.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 181 TAMVMEASPSPQSVGREFVRQYYTLLNK 264
T+++ E SP+ RE VR Y+LL+K
Sbjct: 197 TSLIREPISSPEQELRENVRDPYSLLSK 224
>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
5',5'''-p1,p6-hexaphosphate hydrolase Aps1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 351 GKRLAVGGVETAVDERRVIVVES 283
G RLA G V + D+R+V++V S
Sbjct: 40 GARLAAGVVALSADKRKVLLVSS 62
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 4.2
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +1
Query: 325 DAPNRETLPVVGQKQIHNRIQQLN 396
DAP+R ++ +VG +H +Q+++
Sbjct: 439 DAPHRRSILIVGDGSLHLTVQEIS 462
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 4.2
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 199 ASPSPQSVGREFVRQYYTLLNKAPAHLHRFYNNYSSFIHGGLDAPNRET 345
+SP PQS ++ L +A A +HR N S + GL+A N T
Sbjct: 347 SSPLPQSQSSSIFVEHLNQLYEANASIHRPVNPAFS-TNFGLEASNTST 394
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 297 IVVESMEMGGRLVQERVVL 241
IVVES +GGRL Q ++L
Sbjct: 211 IVVESTNLGGRLNQNSILL 229
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 226 REFVRQYYTLLNKAPAHLHRFYNNYSSFIH 315
RE +R++ TL + A LH FYN+ H
Sbjct: 405 RELLRRF-TLQQRLVADLHEFYNSVKGPAH 433
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.0 bits (52), Expect = 5.6
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 318 RSRRPQPRDASRCGTEADPQSHPAAQLPRLPCQDQS-GGRSSDPGQRR 458
RSR P P +A D +S + PR + +S GRS P R
Sbjct: 114 RSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDR 161
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 288 LQQLLVVHPRRSRRPQPRDASRCGTEADPQSHPAAQL 398
L++ +V PR+ RR +PRD++ G AD + A ++
Sbjct: 441 LKKGIVRQPRKRRRYRPRDSTSDGI-ADTAAESAKEM 476
>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 143
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 144 CPQYNLGIKLVYTEINNH*IRASFSINFLKTEKSLPHRL 28
C + +++VY + N IR +FSI K +P L
Sbjct: 65 CRCFQQVVRIVYWFLGNQVIRENFSIKKRKPHNHIPQLL 103
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 24.2 bits (50), Expect = 9.7
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = +1
Query: 217 SVGREFVRQYYTLLNKAPAHLH 282
S+GREF+ Q++ ++ + ++H
Sbjct: 443 SIGREFLAQFHLVIKRVLINIH 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,830,498
Number of Sequences: 5004
Number of extensions: 33763
Number of successful extensions: 98
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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