Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29e12
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   0.91 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   0.91 
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   6.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   6.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.4  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 259 NKAPAHLHRFYNNYSSFI 312
           N  P  L+ FYNN++S I
Sbjct: 521 NNVPKKLNMFYNNFNSDI 538


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 259 NKAPAHLHRFYNNYSSFI 312
           N  P  L+ FYNN++S I
Sbjct: 521 NNVPKKLNMFYNNFNSDI 538


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 174 VNNSDGHGGVPISAERRPR 230
           V  SDG G      E+RPR
Sbjct: 6   VKRSDGRGNGGTPEEKRPR 24


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +1

Query: 178 TTAMVMEASPSPQSVGREFVRQYYTLLNKAPAHLHRFYNNYSSFIHGG 321
           TT +V  +         + V +  T  +  P   HR   N+ S++H G
Sbjct: 147 TTCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRINFGSWVHSG 194


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 148 YSRRLYRSVSTTAMVMEASPS 210
           Y RR  R+ STT  V   SP+
Sbjct: 581 YKRRPQRACSTTGGVPSKSPT 601


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,743
Number of Sequences: 438
Number of extensions: 2538
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)