Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29e10
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0330 - 29318549-29318895,29320084-29320189,29320287-293206...    30   1.4  
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622...    28   7.5  

>05_07_0330 -
           29318549-29318895,29320084-29320189,29320287-29320613,
           29320714-29321271
          Length = 445

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/61 (29%), Positives = 34/61 (55%)
 Frame = +2

Query: 455 NRDLEVAQPLAGQGRVVQSLGHRLQDLDLIAQNLGPKVLNHKQPKAVPAPNQLLVVQENQ 634
           NR+ E A+  A  G+V+Q  G+R+  +  +++++G K L   +P  +P P   +V +   
Sbjct: 297 NREDEYARIEALGGKVIQWNGYRVLGVLAMSRSIGDKYL---KPYIIPVPEVTVVARAKD 353

Query: 635 D 637
           D
Sbjct: 354 D 354


>08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,
            6222521-6222616,6222750-6222848,6222929-6223027,
            6223811-6223882,6224508-6224597,6225173-6227329
          Length = 1146

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/89 (24%), Positives = 39/89 (43%)
 Frame = +2

Query: 365  QTLQRDLIDQAQLRAISQAHRVPSLKLQDGNRDLEVAQPLAGQGRVVQSLGHRLQDLDLI 544
            Q+ Q D ++  QL   +  ++    +    NR   +    A Q  ++Q+L      +D I
Sbjct: 837  QSRQADTVNHIQLNQDNTVNQFQLRRADTVNRIQTMQDSTADQPHLIQAL-----TVDQI 891

Query: 545  AQNLGPKVLNHKQPKAVPAPNQLLVVQEN 631
              N    V+NH Q +     N + V+Q+N
Sbjct: 892  HANR-ENVVNHFQSRQADTVNHIQVIQDN 919


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,003,550
Number of Sequences: 37544
Number of extensions: 226632
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)