Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29e10
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067948-4|AAO25983.1| 756|Caenorhabditis elegans Egl-27 relate... 33 0.24
AF067948-3|AAO25984.1| 870|Caenorhabditis elegans Egl-27 relate... 33 0.24
AF067948-2|AAD34654.1| 870|Caenorhabditis elegans Egl-27 relate... 33 0.24
AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 relate... 33 0.24
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 29 2.2
AC024826-18|AAF60803.1| 412|Caenorhabditis elegans Cop-9 signal... 29 3.8
AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical ... 27 8.9
AL032660-1|CAA21752.1| 711|Caenorhabditis elegans Hypothetical ... 23 9.5
>AF067948-4|AAO25983.1| 756|Caenorhabditis elegans Egl-27 related
protein 1, isoform c protein.
Length = 756
Score = 32.7 bits (71), Expect = 0.24
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 254 AVSRGPCLVAHLGQAVNHQNHITLPGLKDHQMVHEVN-QTLQRDLIDQAQLRAISQAHRV 430
A RG C V LG QN++ L H +V++ N QTL L D+ +R + V
Sbjct: 234 AAIRGKCRVVLLGDGEEAQNYLPLDDTFYHSLVYDPNAQTL---LADKGAIRVGEKYQAV 290
Query: 431 PSLKLQDGNRDLEVAQPLA 487
++ +R+ + A+ LA
Sbjct: 291 VDEWMEPADREAKEAKVLA 309
>AF067948-3|AAO25984.1| 870|Caenorhabditis elegans Egl-27 related
protein 1, isoform d protein.
Length = 870
Score = 32.7 bits (71), Expect = 0.24
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 254 AVSRGPCLVAHLGQAVNHQNHITLPGLKDHQMVHEVN-QTLQRDLIDQAQLRAISQAHRV 430
A RG C V LG QN++ L H +V++ N QTL L D+ +R + V
Sbjct: 234 AAIRGKCRVVLLGDGEEAQNYLPLDDTFYHSLVYDPNAQTL---LADKGAIRVGEKYQAV 290
Query: 431 PSLKLQDGNRDLEVAQPLA 487
++ +R+ + A+ LA
Sbjct: 291 VDEWMEPADREAKEAKVLA 309
>AF067948-2|AAD34654.1| 870|Caenorhabditis elegans Egl-27 related
protein 1, isoform b protein.
Length = 870
Score = 32.7 bits (71), Expect = 0.24
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 254 AVSRGPCLVAHLGQAVNHQNHITLPGLKDHQMVHEVN-QTLQRDLIDQAQLRAISQAHRV 430
A RG C V LG QN++ L H +V++ N QTL L D+ +R + V
Sbjct: 234 AAIRGKCRVVLLGDGEEAQNYLPLDDTFYHSLVYDPNAQTL---LADKGAIRVGEKYQAV 290
Query: 431 PSLKLQDGNRDLEVAQPLA 487
++ +R+ + A+ LA
Sbjct: 291 VDEWMEPADREAKEAKVLA 309
>AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 related
protein 1, isoform a protein.
Length = 1022
Score = 32.7 bits (71), Expect = 0.24
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 254 AVSRGPCLVAHLGQAVNHQNHITLPGLKDHQMVHEVN-QTLQRDLIDQAQLRAISQAHRV 430
A RG C V LG QN++ L H +V++ N QTL L D+ +R + V
Sbjct: 234 AAIRGKCRVVLLGDGEEAQNYLPLDDTFYHSLVYDPNAQTL---LADKGAIRVGEKYQAV 290
Query: 431 PSLKLQDGNRDLEVAQPLA 487
++ +R+ + A+ LA
Sbjct: 291 VDEWMEPADREAKEAKVLA 309
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +2
Query: 377 RDLIDQAQLRAISQAHRVPSLKLQDGNRDLEVAQPLAGQGRVVQSLGHRLQDLDLIAQNL 556
RDL + QL S+ R+P LKL D + L + + G Q H D I
Sbjct: 769 RDLKAKGQLERTSKPPRIPPLKLSDSEK-LRL-DNIPGDKTETQKKNHTKLVADFIRNAP 826
Query: 557 GPKVLNHKQPK 589
++LN P+
Sbjct: 827 NNRILNKPPPR 837
>AC024826-18|AAF60803.1| 412|Caenorhabditis elegans Cop-9
signalosome subunit protein 4 protein.
Length = 412
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 332 LKDHQMVHEVNQTLQRDLIDQAQLRAISQAHRVPSLKL--QDGNRDLEVAQPLAGQ 493
L+DHQ E +++ + +I + + AISQ + S K Q D E A+ +AG+
Sbjct: 298 LQDHQKADEHGESILKGVIQEHNITAISQLYINISFKTLGQLLGVDTEAAESMAGE 353
>AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical
protein F42G2.5 protein.
Length = 374
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 233 LHPLAKKAVSRGPCLVAHLGQAVNHQN 313
LH +A VS+ LVA L + + HQN
Sbjct: 283 LHTIADMNVSKNALLVAELSEILKHQN 309
>AL032660-1|CAA21752.1| 711|Caenorhabditis elegans Hypothetical
protein Y70G10A.2 protein.
Length = 711
Score = 23.4 bits (48), Expect(2) = 9.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 119 RLLRCRRNQLFSFI*LNLIL 60
R+ +CR N+L SFI L L++
Sbjct: 428 RVEKCRDNELLSFIGLLLLI 447
Score = 22.2 bits (45), Expect(2) = 9.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 137 AISELSRLLRCRR 99
AI E SRL++CRR
Sbjct: 394 AIYESSRLIKCRR 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,850,155
Number of Sequences: 27780
Number of extensions: 191354
Number of successful extensions: 499
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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