Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29e10
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.64 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 350 VHEVNQTLQRDLIDQAQLRAISQAH 424
           +H++ Q LQ+ ++   QL++  Q H
Sbjct: 71  IHQMQQLLQQHILSPTQLQSFMQQH 95


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -3

Query: 259 DC--LLCQRVQGFGFYCDYHYDWS 194
           DC  LL   + GFG YC  H D S
Sbjct: 408 DCVTLLFSGIVGFGAYCAAHTDSS 431


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -3

Query: 259 DC--LLCQRVQGFGFYCDYHYDWS 194
           DC  LL   + GFG YC  H D S
Sbjct: 408 DCVTLLFSGIVGFGAYCAAHTDSS 431


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 500 VVQSLGHRLQDLDLIAQNLGPKVLN 574
           +++SL H  QDL  I     P V+N
Sbjct: 149 MIESLSHTTQDLVFIWNMTDPLVVN 173


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 302 NHQNHITLPGLKDHQMVHEVNQTLQR 379
           NH +H+    ++DH   ++  Q  Q+
Sbjct: 146 NHHHHLQSTAVQDHHRPYQQQQQQQQ 171


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 547 GYEIEILESVPQTLDYPT 494
           G  IEI+   P+TL +P+
Sbjct: 343 GNNIEIIVKDPETLQFPS 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,919
Number of Sequences: 438
Number of extensions: 2296
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)