Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29e05
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   103   1e-24
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.55 

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  103 bits (247), Expect = 1e-24
 Identities = 59/160 (36%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
 Frame = +3

Query: 189 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 368
           +F++ GL   +L+ + K GY +PT IQ+  IP+ L+G+D+++ A+TGSGKTA F+LPI+ 
Sbjct: 159 SFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIH 218

Query: 369 KLLVPNNKPTPGKNLR---ALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQ 539
            LL   N P    N      +I+SPTRELA+Q     ++    + +  A I GG S   Q
Sbjct: 219 NLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQ 278

Query: 540 FNVMSGSSPDIVVATPGRFLHICIEMSLKLDNIXIVVFDE 659
              + G    I+VATPGR        ++  +++   V DE
Sbjct: 279 RGRILGGC-HILVATPGRLKDFVNRGNVSFNSLKYFVLDE 317


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 438 RELALQTLRFVRELGKFTGLTSAAILG 518
           R+  ++ LR + E G+F GL S  +LG
Sbjct: 156 RQNPVKFLRAIEEYGRFFGLDSQRLLG 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,011
Number of Sequences: 336
Number of extensions: 2844
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)