Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29e05
         (661 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...   109   1e-25
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   6.5  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score =  109 bits (261), Expect = 1e-25
 Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
 Frame = +3

Query: 189 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 368
           +F+  GL   V+  + K  Y +PTPIQR  IPI L G+D++A A+TGSGKTA F+LP++ 
Sbjct: 175 SFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIH 234

Query: 369 KLL-VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 545
            LL   ++     +N   +I++PTRELA+Q     R+    T L      GG +++ Q  
Sbjct: 235 HLLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQ 294

Query: 546 VMSGSSPDIVVATPGRFLHICIEMSLKLDNIXIVVFDE 659
           +M G    ++VATPGR L       +  +N+  VV DE
Sbjct: 295 LMRGGC-HVLVATPGRLLDFIDRGYVTFENVNFVVLDE 331


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 351 QNKLFFRTQFGPLQQHLS 298
           + KL + T  GP+++H+S
Sbjct: 620 ERKLIYNTSAGPVERHIS 637


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,819
Number of Sequences: 2352
Number of extensions: 12119
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)