Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d24
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0Q3B3 Cluster: N-acetylmuramoyl-L-alanine amidase; n=1...    38   0.18 
UniRef50_A2QPW0 Cluster: Similarity: only N-terminal 250 aa show...    36   0.93 
UniRef50_Q4RVW6 Cluster: Chromosome 9 SCAF14991, whole genome sh...    36   1.2  
UniRef50_A6W7T8 Cluster: Drug resistance transporter, Bcr/CflA s...    33   6.6  
UniRef50_Q9Y8D1 Cluster: Mating-type protein MAT-1; n=1; Cochlio...    33   6.6  

>UniRef50_A0Q3B3 Cluster: N-acetylmuramoyl-L-alanine amidase; n=1;
           Clostridium novyi NT|Rep: N-acetylmuramoyl-L-alanine
           amidase - Clostridium novyi (strain NT)
          Length = 605

 Score = 38.3 bits (85), Expect = 0.18
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = -1

Query: 409 REQNNNKYAWAVRYNRCTWVVSFPKNQ-QHLEKYNISLNVSDTATKFLRIKSVARHQANT 233
           +++NNN  A  V YN    V  FPKN+ +    Y +S+  S  +T   RIK+  + Q +T
Sbjct: 57  QDENNNNIAIDVFYNNSRQVTVFPKNEYKPNTNYTLSIKDSVKSTDGKRIKTPVKLQFST 116

Query: 232 KFNVIRTTQLHTPVT 188
           +   I+T    T VT
Sbjct: 117 ETVHIKTINDITEVT 131


>UniRef50_A2QPW0 Cluster: Similarity: only N-terminal 250 aa show
           similarity to An01g10240; n=1; Aspergillus niger|Rep:
           Similarity: only N-terminal 250 aa show similarity to
           An01g10240 - Aspergillus niger
          Length = 925

 Score = 35.9 bits (79), Expect = 0.93
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = -1

Query: 595 PTKHSLPQIILTI*LETAVNYSETINY*RAKRTENDIT-RDAVPHSSTRTRLVQYEPRIT 419
           P  H+LP I     +E     S  ++Y  AKR   D + R   PH STR  ++ ++P I+
Sbjct: 507 PQDHALPSIETATPMEIRRPNSGQLDY-LAKRISGDFSIRSITPHRSTRQEMIHHDPDIS 565

Query: 418 N*NREQNNNKYAWAVRYNRC 359
           + ++     +     R   C
Sbjct: 566 DRDQASKRRRMGQCDRERLC 585


>UniRef50_Q4RVW6 Cluster: Chromosome 9 SCAF14991, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 9 SCAF14991, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 540

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 25/83 (30%), Positives = 33/83 (39%)
 Frame = -1

Query: 499 TENDITRDAVPHSSTRTRLVQYEPRITN*NREQNNNKYAWAVRYNRCTWVVSFPKNQQHL 320
           +E  +   A P    R R V  +P        + N   A   R  R  WV S  K  + L
Sbjct: 352 SEAKMVSPAQPTGGRRRRTVDDDPDERRQRFLERNRAAASRCRQKRKLWVFSLEKKAEEL 411

Query: 319 EKYNISLNVSDTATKFLRIKSVA 251
              NISL+V  T    LR+  V+
Sbjct: 412 GTLNISLSVRGTRFHVLRMNEVS 434


>UniRef50_A6W7T8 Cluster: Drug resistance transporter, Bcr/CflA
           subfamily; n=1; Kineococcus radiotolerans SRS30216|Rep:
           Drug resistance transporter, Bcr/CflA subfamily -
           Kineococcus radiotolerans SRS30216
          Length = 387

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 25/106 (23%), Positives = 44/106 (41%)
 Frame = +3

Query: 195 GVCNCVVRITLNFVFA*CLATDFILRNFVAVSETFKLILYFSKCC*FFGNDTTHVHLLYR 374
           G   C+V +    VFA   A+ F+L+N V +S     +++ +              LL R
Sbjct: 205 GYVGCLVLVFAT-VFAYVSASPFVLQNVVGLSPRTYSVVFATNALGIVAAGAVSNRLLRR 263

Query: 375 TAHAYLLLFCSLFQFVIRGSYCTSLVRVEEWGTASRVMSFSVRFAL 512
              A +L      Q V      T++V ++ W  A  V+ +   F++
Sbjct: 264 RTPAQVLTAGVALQVVCAAGLFTTVVALDAWAPAVLVLLWFTMFSI 309


>UniRef50_Q9Y8D1 Cluster: Mating-type protein MAT-1; n=1;
           Cochliobolus cymbopogonis|Rep: Mating-type protein MAT-1
           - Cochliobolus cymbopogonis
          Length = 354

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 202 HTPVTIWIH*IVSFYKY*HYQPNYICKQNISRNTYRKQFLNSERDRVDQ--ARQIGQNMA 29
           H  + + +  I++F +   Y P YI   NI+  T+  Q  NS     DQ  A +    MA
Sbjct: 179 HIDLALSVEDIIAFVRNAGYAPTYIPNDNITSPTFLGQLANSPALEEDQAVAEEYDTPMA 238

Query: 28  DLKSTS 11
           D  S S
Sbjct: 239 DTSSAS 244


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,191,992
Number of Sequences: 1657284
Number of extensions: 13211218
Number of successful extensions: 34014
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33999
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)