Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d24
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    29   0.63 
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   7.8  

>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 406 EQNNNKYAWAVRYNRCTWVVSFPKNQQHLEKYNISLNVSDTATKFLR 266
           EQN+      V Y  CT+   F KNQ +L    I + V      FL+
Sbjct: 101 EQNDEILMLNVAYPTCTYAADFAKNQHNLRLDVIDVGVEIDEDLFLK 147


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 596 CSAHGAHVTRDECLGVSRLRLAGA 667
           C  HG  +TRD  L +  ++L+GA
Sbjct: 556 CFMHGWGITRDRYLALHLIKLSGA 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,959
Number of Sequences: 5004
Number of extensions: 60307
Number of successful extensions: 153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)