Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d24
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29082-8|AAA68405.1|  228|Caenorhabditis elegans Sex muscle abno...    33   0.19 
S88446-1|AAB21850.1|  228|Caenorhabditis elegans sem-5 protein.        33   0.19 
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U41010-1|AAF98589.2|  313|Caenorhabditis elegans Serpentine rece...    29   2.4  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U29082-8|AAA68405.1|  228|Caenorhabditis elegans Sex muscle
           abnormal protein 5 protein.
          Length = 228

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 409 REQNNNKYAWAVRYNRCTWVVSFPKNQQHLEKYNISLNVSDTATKFLR 266
           R+QN   Y WAV++N    +V++ +       + I L+  +  TKF++
Sbjct: 113 RDQNGKYYLWAVKFNSLNELVAYHRTASVSRTHTILLSDMNVETKFVQ 160


>S88446-1|AAB21850.1|  228|Caenorhabditis elegans sem-5 protein.
          Length = 228

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 409 REQNNNKYAWAVRYNRCTWVVSFPKNQQHLEKYNISLNVSDTATKFLR 266
           R+QN   Y WAV++N    +V++ +       + I L+  +  TKF++
Sbjct: 113 RDQNGKYYLWAVKFNSLNELVAYHRTASVSRTHTILLSDMNVETKFVQ 160


>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical
           protein C14B4.2 protein.
          Length = 1776

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 252 ATDFILRNFVAVSETFKLILYFSKCC*FFGNDTTHVHLLYRTAHAY 389
           A   +   F  V+E F L+L  S    FFGN  T  H+L  T   Y
Sbjct: 539 ALSLLFSGFCHVTEQFDLVLQDSAH--FFGNSRTEAHVLRLTCKGY 582


>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical
           protein C14B4.2 protein.
          Length = 1776

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 252 ATDFILRNFVAVSETFKLILYFSKCC*FFGNDTTHVHLLYRTAHAY 389
           A   +   F  V+E F L+L  S    FFGN  T  H+L  T   Y
Sbjct: 539 ALSLLFSGFCHVTEQFDLVLQDSAH--FFGNSRTEAHVLRLTCKGY 582


>U41010-1|AAF98589.2|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein19 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/75 (32%), Positives = 35/75 (46%)
 Frame = +1

Query: 94  FCMYYGICFVYKYSLVGSANTYKMKLFNESISLRECATV*FVLH*ILYLLDASQLTLF*E 273
           FC  Y I F+Y   +  + NTY ++ F   +S+  C T    L   LY    S L  + E
Sbjct: 103 FCAVYMI-FLYD-RIFSNFNTYMLRNFAVVVSIGMCFTFYEFLGCYLYFEQESWLFSYPE 160

Query: 274 ISSQCLKRLSLYCIF 318
              +C  +L+ YC F
Sbjct: 161 NDVRC-DQLTWYCDF 174


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 284  CDEISQNKVSCEASSKYKI*CNTNYT 207
            CDE+  NK+S E    YK  C + YT
Sbjct: 1236 CDEVDVNKLSDEEYRLYKKRCMSTYT 1261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,235,718
Number of Sequences: 27780
Number of extensions: 343874
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)