Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d22
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz...    27   2.8  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.7  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.9  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   8.6  

>SPCC1393.11 |||mitochondrial ribosomal protein subunit
           L20|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 123 CEIRKSNI--FHENYDKKVLKWGSSRRAVSHQ 212
           CE  K  I    EN++ + L WGS +R +  Q
Sbjct: 150 CEAPKERIQKVEENFEAEKLAWGSKKREIRRQ 181


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +2

Query: 317 EKIKRMQQKSEEIERREKELASQGGATLKWTAE*DTEERASVN 445
           E  K++QQK+EE+E++  +  S+     K  A+ + +++ SV+
Sbjct: 29  EHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDKDKHSVS 71


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 305 VKDLEKIKRMQQKSEEIERREKELASQGGA-TLK-WTAE*DTEERASVNKQEK 457
           +++++ +KR Q+K +   ++ K+L  Q     LK   +E D E+  +  KQ K
Sbjct: 605 IENIQVVKRRQEKEKSFRQKAKQLKQQEDEDNLKRKRSESDVEDNEAKEKQAK 657


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 308 KDLEKIKRMQQKSEEIERREKEL 376
           K +E IKR  +K +E+E+ +KEL
Sbjct: 127 KAVEMIKRRDKKVKELEKIQKEL 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,873
Number of Sequences: 5004
Number of extensions: 48889
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)