Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d22
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence ...    29   4.6  
AF016665-9|AAC71177.1|  363|Caenorhabditis elegans Nuclear hormo...    29   4.6  
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting...    28   8.0  
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    28   8.0  
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting...    28   8.0  

>U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 10 protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +2

Query: 338 QKSEEIERREKELASQGGATLKWTAE*DTEERASVNKQEKYRYKN 472
           QKSEE +RR +E+  Q  A LK T++ D  +  +  KQE    KN
Sbjct: 359 QKSEERQRRIEEITEQ-IANLK-TSQPDVSQEIAKKKQELLALKN 401


>AF016665-9|AAC71177.1|  363|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 166 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 117 VSCEIRKSNIFHENYDKKVLKWGS 188
           +SC +R  NI  EN ++K+  WGS
Sbjct: 143 LSCYLRPKNISWENTERKLKPWGS 166


>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
           protein protein8, isoform a protein.
          Length = 1132

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 405 HFKVAPPCEANSFSRLSISSLFCC 334
           +F++ PP + +SF + S+   FCC
Sbjct: 291 YFRMMPPLDFSSFPKNSLMCYFCC 314


>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
           protein protein8, isoform b protein.
          Length = 1780

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 405 HFKVAPPCEANSFSRLSISSLFCC 334
           +F++ PP + +SF + S+   FCC
Sbjct: 291 YFRMMPPLDFSSFPKNSLMCYFCC 314


>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
           protein protein8, isoform c protein.
          Length = 1697

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 405 HFKVAPPCEANSFSRLSISSLFCC 334
           +F++ PP + +SF + S+   FCC
Sbjct: 291 YFRMMPPLDFSSFPKNSLMCYFCC 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,261
Number of Sequences: 27780
Number of extensions: 275824
Number of successful extensions: 775
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)