Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d18
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.62 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.9  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   3.3  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    22   4.4  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 413 IVLS*TLPKKSNTLTVSILFNLILVSLACIGSNRLRAPTD*VDKIFKLS 267
           ++ S T P++   L    L N I +++  +GS    A TD   K F++S
Sbjct: 348 LMFSATFPEEVQQLAGKFLLNYIFIAVGIVGS----ACTDVEQKFFQVS 392


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -2

Query: 176 ICVCAEGFAGGXXXXXXRVCD 114
           IC C  GF G        +CD
Sbjct: 46  ICTCKPGFTGSNCQNRINLCD 66


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -2

Query: 95  ISSISFIEAIMVEFDKQR 42
           ++++S +  +MV+FDK+R
Sbjct: 307 LNTVSTLLIVMVQFDKER 324


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 519 CIGSSIFNRNLFISKYNAIALIV 451
           C G   F +NL +   N + L V
Sbjct: 38  CYGRHFFKKNLIVGSENCLVLNV 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,834
Number of Sequences: 336
Number of extensions: 2692
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)