Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d17
         (386 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6RAU9 Cluster: Putative uncharacterized protein; n=1; ...    36   0.36 
UniRef50_UPI0000E80D5A Cluster: PREDICTED: similar to iroquois 3...    35   0.47 
UniRef50_Q1DY31 Cluster: Putative uncharacterized protein; n=1; ...    35   0.63 
UniRef50_Q9N4P0 Cluster: Putative uncharacterized protein; n=1; ...    34   0.83 
UniRef50_UPI0000DA2768 Cluster: PREDICTED: similar to Oxygen-reg...    33   1.4  
UniRef50_Q4Q2X5 Cluster: Putative uncharacterized protein; n=4; ...    33   1.9  
UniRef50_UPI000023E37F Cluster: hypothetical protein FG10817.1; ...    32   4.4  
UniRef50_A1R4P2 Cluster: Putative uncharacterized protein; n=1; ...    32   4.4  
UniRef50_Q6S6W0 Cluster: Glycoprotein X precursor; n=22; root|Re...    32   4.4  
UniRef50_Q8I6Y9 Cluster: Trp (Transient receptor potential) chan...    31   5.8  
UniRef50_Q54MI9 Cluster: Putative uncharacterized protein; n=1; ...    31   5.8  
UniRef50_Q0UFJ1 Cluster: Predicted protein; n=1; Phaeosphaeria n...    31   5.8  
UniRef50_Q54WI0 Cluster: Putative uncharacterized protein; n=2; ...    31   7.7  
UniRef50_Q17H35 Cluster: Putative uncharacterized protein; n=1; ...    31   7.7  

>UniRef50_A6RAU9 Cluster: Putative uncharacterized protein; n=1;
           Ajellomyces capsulatus NAm1|Rep: Putative
           uncharacterized protein - Ajellomyces capsulatus NAm1
          Length = 361

 Score = 35.5 bits (78), Expect = 0.36
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 267 KPTGSSQPHIASQPDPITNVSTPDLTKMGFTHTTVNSFSSPGRL 136
           +P    +P   S P P +   +P ++ MG+   T+NS SSPG L
Sbjct: 298 RPPQPLEPPANSDPRPNSVAGSPHISSMGWASPTLNSISSPGAL 341


>UniRef50_UPI0000E80D5A Cluster: PREDICTED: similar to iroquois 3
           homeobox protein; n=1; Gallus gallus|Rep: PREDICTED:
           similar to iroquois 3 homeobox protein - Gallus gallus
          Length = 295

 Score = 35.1 bits (77), Expect = 0.47
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -3

Query: 255 SSQPHIASQPDPITNVSTPDLTKMGFTHTTVNSFSSPGRL*PSLMP-----SSVIPVNKK 91
           ++ PH  + P P+  ++TP L  +G       +F  P    PS  P     S  + V KK
Sbjct: 207 AASPHHHAAPHPLALLNTPHLLGLGAAPAAAAAFPRPAEQAPSAEPPGADRSIALEVKKK 266

Query: 90  KVNTTF 73
            +NT F
Sbjct: 267 LINTAF 272


>UniRef50_Q1DY31 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 527

 Score = 34.7 bits (76), Expect = 0.63
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = -3

Query: 264 PTGSSQPHIASQPDPITNVSTPDLTKMGFTHTT----VNSFSSPG 142
           PTG+S+P + S+P   T+VST  +      HTT    V++ S+PG
Sbjct: 29  PTGTSRPGLTSRPTRTTSVSTASVKPPSHAHTTSEGSVSAASTPG 73


>UniRef50_Q9N4P0 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 176

 Score = 34.3 bits (75), Expect = 0.83
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +2

Query: 257 PVGFYIRCLRPMGGTNPPPALLEFVVRL 340
           P+ FYIR L P+ GT P P L+ F V L
Sbjct: 4   PLPFYIRLLPPLPGTRPAPKLINFPVLL 31


>UniRef50_UPI0000DA2768 Cluster: PREDICTED: similar to
            Oxygen-regulated protein 1 (Retinitis pigmentosa RP1
            protein homolog); n=2; Rattus norvegicus|Rep: PREDICTED:
            similar to Oxygen-regulated protein 1 (Retinitis
            pigmentosa RP1 protein homolog) - Rattus norvegicus
          Length = 2171

 Score = 33.5 bits (73), Expect = 1.4
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -3

Query: 252  SQPHIASQPDPITNVSTPDLTKMGFTHTTVNSF 154
            S+ HIA++ DP+ ++  PDLT+ G  H +V S+
Sbjct: 910  SEQHIATRADPLASLKKPDLTE-GIPHHSVKSY 941


>UniRef50_Q4Q2X5 Cluster: Putative uncharacterized protein; n=4;
            Leishmania|Rep: Putative uncharacterized protein -
            Leishmania major
          Length = 1931

 Score = 33.1 bits (72), Expect = 1.9
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -3

Query: 303  FVPPIGRRQRI*KPTGSSQPHIASQPDPITNVSTPDLTKMGFTHTTVNSFSSPGRL*PSL 124
            F  P+G+R    +   S  P+I+++P     VS P  T MG         +SP R  P +
Sbjct: 1797 FGRPVGKRATAAETVVSGPPYISNRPRGGVGVSPPVGTVMGSPRVNAELAASPIRGIPGV 1856

Query: 123  MPSS 112
            +P+S
Sbjct: 1857 IPAS 1860


>UniRef50_UPI000023E37F Cluster: hypothetical protein FG10817.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG10817.1 - Gibberella zeae PH-1
          Length = 159

 Score = 31.9 bits (69), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 332 LQTRVRRAEDSYRPSVAGNGYKSRPAAHSLTSHHSQIRSPTSL 204
           L+ R+R  ED  R S  G   +  P   + T++ +Q + P+SL
Sbjct: 65  LEARIREMEDRLRRSTGGAAQQRSPLPQTQTANQAQAQQPSSL 107


>UniRef50_A1R4P2 Cluster: Putative uncharacterized protein; n=1;
           Arthrobacter aurescens TC1|Rep: Putative uncharacterized
           protein - Arthrobacter aurescens (strain TC1)
          Length = 627

 Score = 31.9 bits (69), Expect = 4.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 261 TGSSQPHIASQPDPITNVSTPDLTKMGFTHTTVNSFSSPGRL*PSLMPSSVIP 103
           T  +  H  S+PD +  V+  D T +G+T   +    +PG + P+   SS  P
Sbjct: 177 TAGAASHADSEPD-VRTVAVSDETMIGYTEADIGLTIAPGHMIPTTEASSTEP 228


>UniRef50_Q6S6W0 Cluster: Glycoprotein X precursor; n=22; root|Rep:
           Glycoprotein X precursor - Equine herpesvirus 1 (strain
           V592) (EHV-1) (Equine abortion virus)
          Length = 866

 Score = 31.9 bits (69), Expect = 4.4
 Identities = 25/88 (28%), Positives = 38/88 (43%)
 Frame = -3

Query: 333 TTNSSKAGGGFVPPIGRRQRI*KPTGSSQPHIASQPDPITNVSTPDLTKMGFTHTTVNSF 154
           T++SS +G G     G       PT +S P  +S P   T+ S+P  T    + T   S 
Sbjct: 30  TSSSSTSGSGQSTSSGTTNSSSSPT-TSPPTTSSSPPTSTHTSSPSSTSTQSSSTAATSS 88

Query: 153 SSPGRL*PSLMPSSVIPVNKKKVNTTFT 70
           S+P     +   ++ IP +     TT T
Sbjct: 89  SAPS----TASSTTSIPTSTSTETTTTT 112


>UniRef50_Q8I6Y9 Cluster: Trp (Transient receptor potential) channel
           family protein 2, isoform b; n=3; Caenorhabditis|Rep:
           Trp (Transient receptor potential) channel family
           protein 2, isoform b - Caenorhabditis elegans
          Length = 886

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 267 KPTGSSQPHIASQPDPITNVSTPDLTKMGFTHTTVNSFSSPGRL*PSLMPSS 112
           K T  ++  + +    +     P + K G  + +++S  S GRL PS MPSS
Sbjct: 774 KKTAMAERRLKNSALLLKEFPVPQMFKAGQRNMSISSIQSNGRLKPSFMPSS 825


>UniRef50_Q54MI9 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 970

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = -3

Query: 297 PPIGRRQRI*KPTGSSQPHIASQPDP--ITNVSTPDLTKMGFTHTTVNSFSSPGRL*PSL 124
           PP    Q    P+   Q +I   P    +T   +P L+    TH+T    ++  +L PS 
Sbjct: 331 PPTRNNQSSPSPSSPQQQNIMPTPPSTSLTPPQSPTLSPSSSTHSTPTQTTTTIKLPPSS 390

Query: 123 MPSSVIPVNKKKVNTTFT 70
            PS++   N +K     T
Sbjct: 391 PPSTISQNNARKTQIPTT 408


>UniRef50_Q0UFJ1 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 226

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 234 SQPDPITNVSTPDLTKMGFTH---TTVNSFSSPGRL*PSLMPSSVIPV 100
           SQP      STPD++ + F +   TT+  FS+P  L  + +PS +I V
Sbjct: 108 SQPTQPGATSTPDISTIQFQYPWETTIPPFSAPSTLLTTAIPSLIITV 155


>UniRef50_Q54WI0 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 1333

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
 Frame = -3

Query: 264 PTGSSQPHIA-SQPDPITNVSTPDLTKMGFTHTTVNSFSSPGRL*PSLMPSSVIPVNKKK 88
           P   S P ++  QP P    +T   T      TT  S ++     PSL  S  +P N   
Sbjct: 125 PNTPSSPSVSRQQPTPTPTPTTTTTTTTTAAATTTGSTTATSTTTPSLSASITLPPNSLT 184

Query: 87  VNTTFTV*SHVLLCDS*QQVQDRNKILR 4
                T  SH+   ++ +  +   KI++
Sbjct: 185 SGNNITSTSHIEYQNAMENKKTLKKIIK 212


>UniRef50_Q17H35 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 385

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -3

Query: 255 SSQPHIASQPDPITNVSTPDLTKMGFTHT-TVNSFSSPGRL*PSLMPSSVIPVNKKKVNT 79
           +SQ    S+ DPI+NVS P   +   T T  + + +S G+   +   SS+ P +++ +N 
Sbjct: 205 NSQKTSPSKRDPISNVSRPTSGQSPVTQTPKIAAVASYGKNPVATSSSSIDPGSERVLNN 264

Query: 78  TF 73
           TF
Sbjct: 265 TF 266


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 349,190,777
Number of Sequences: 1657284
Number of extensions: 6653465
Number of successful extensions: 18123
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18086
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15718494179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)