Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29d17
(386 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006832-3|AAF39997.1| 176|Caenorhabditis elegans Hypothetical ... 34 0.030
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 31 0.21
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 1.1
Z49126-7|CAD56566.1| 392|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z49126-6|CAA88942.2| 530|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z49126-4|CAD56565.1| 336|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z49066-3|CAD56555.1| 392|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z49066-2|CAD56554.1| 530|Caenorhabditis elegans Hypothetical pr... 28 2.6
U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain (pr... 28 2.6
U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain (pr... 28 2.6
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 27 4.6
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 27 4.6
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 27 4.6
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 27 4.6
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 27 4.6
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 27 4.6
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 26 8.1
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 26 8.1
>AC006832-3|AAF39997.1| 176|Caenorhabditis elegans Hypothetical
protein ZK355.3 protein.
Length = 176
Score = 34.3 bits (75), Expect = 0.030
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 257 PVGFYIRCLRPMGGTNPPPALLEFVVRL 340
P+ FYIR L P+ GT P P L+ F V L
Sbjct: 4 PLPFYIRLLPPLPGTRPAPKLINFPVLL 31
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -3
Query: 267 KPTGSSQPHIASQPDPITNVSTPDLTKMGFTHTTVNSFSSPGRL*PSLMPSS 112
K T ++ + + + P + K G + +++S S GRL PS MPSS
Sbjct: 774 KKTAMAERRLKNSALLLKEFPVPQMFKAGQRNMSISSIQSNGRLKPSFMPSS 825
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = -3
Query: 264 PTGSSQPHIASQPDPITNVSTPDLTKMGFTHTTVNSFSSPGRL*PSLMPSSVIPVNKKKV 85
P+G++ SQP P + P TH + NS S+ L S S+ + V+ K+
Sbjct: 1037 PSGTTASISQSQPTPGPPGAVPPYALFPRTHQSSNSLSTGSSLPTSSSSSAPVKVSSSKI 1096
Query: 84 NTTFTV*SHVLLCDS*QQVQ 25
+ T S + S +Q
Sbjct: 1097 ESMKTTPSSSSVSSSGSDLQ 1116
>Z49126-7|CAD56566.1| 392|Caenorhabditis elegans Hypothetical
protein DH11.5b protein.
Length = 392
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 207 STPDLTKMGFTHTTVNSFSSPGRL*PSLMPSSVIPVNKKKV 85
S PD+T +G H T ++ SS G+ P + + N ++V
Sbjct: 320 SCPDITSLGLNHPTTSAASSGGKKCPIAVDTDTEEDNFERV 360
>Z49126-6|CAA88942.2| 530|Caenorhabditis elegans Hypothetical
protein DH11.5a protein.
Length = 530
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 207 STPDLTKMGFTHTTVNSFSSPGRL*PSLMPSSVIPVNKKKV 85
S PD+T +G H T ++ SS G+ P + + N ++V
Sbjct: 320 SCPDITSLGLNHPTTSAASSGGKKCPIAVDTDTEEDNFERV 360
>Z49126-4|CAD56565.1| 336|Caenorhabditis elegans Hypothetical
protein DH11.5c protein.
Length = 336
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 207 STPDLTKMGFTHTTVNSFSSPGRL*PSLMPSSVIPVNKKKV 85
S PD+T +G H T ++ SS G+ P + + N ++V
Sbjct: 264 SCPDITSLGLNHPTTSAASSGGKKCPIAVDTDTEEDNFERV 304
>Z49066-3|CAD56555.1| 392|Caenorhabditis elegans Hypothetical
protein DH11.5b protein.
Length = 392
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 207 STPDLTKMGFTHTTVNSFSSPGRL*PSLMPSSVIPVNKKKV 85
S PD+T +G H T ++ SS G+ P + + N ++V
Sbjct: 320 SCPDITSLGLNHPTTSAASSGGKKCPIAVDTDTEEDNFERV 360
>Z49066-2|CAD56554.1| 530|Caenorhabditis elegans Hypothetical
protein DH11.5a protein.
Length = 530
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 207 STPDLTKMGFTHTTVNSFSSPGRL*PSLMPSSVIPVNKKKV 85
S PD+T +G H T ++ SS G+ P + + N ++V
Sbjct: 320 SCPDITSLGLNHPTTSAASSGGKKCPIAVDTDTEEDNFERV 360
>U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform a protein.
Length = 573
Score = 27.9 bits (59), Expect = 2.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -3
Query: 267 KPTGSSQPHIASQPDPITNVSTPDLTKMGFTHTTVNSFSSPGRL---*PSLMPSSVIPVN 97
KP +S P I+ DP+T S+ + +H T + + G L S PSS IP
Sbjct: 437 KPVNNSNPFIS---DPLTPSSSSSSSSHNLSHVTKITVGTIGNLDTPSSSAAPSSYIPRP 493
Query: 96 KKKVNTTFT 70
+T+F+
Sbjct: 494 VVSTSTSFS 502
>U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform b protein.
Length = 589
Score = 27.9 bits (59), Expect = 2.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -3
Query: 267 KPTGSSQPHIASQPDPITNVSTPDLTKMGFTHTTVNSFSSPGRL---*PSLMPSSVIPVN 97
KP +S P I+ DP+T S+ + +H T + + G L S PSS IP
Sbjct: 453 KPVNNSNPFIS---DPLTPSSSSSSSSHNLSHVTKITVGTIGNLDTPSSSAAPSSYIPRP 509
Query: 96 KKKVNTTFT 70
+T+F+
Sbjct: 510 VVSTSTSFS 518
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 332 LQTRVRRAEDSYRPSVAGNGYKSRPAAHSLTSHHSQIRSPTSLLQ 198
L T +RR E S R S AGN P S +S + PT+ +Q
Sbjct: 213 LLTEMRRPEVSVRTSDAGNSSSDSPNDTSNSSKCFRTAPPTTTVQ 257
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 332 LQTRVRRAEDSYRPSVAGNGYKSRPAAHSLTSHHSQIRSPTSLLQ 198
L T +RR E S R S AGN P S +S + PT+ +Q
Sbjct: 213 LLTEMRRPEVSVRTSDAGNSSSDSPNDTSNSSKCFRTAPPTTTVQ 257
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 332 LQTRVRRAEDSYRPSVAGNGYKSRPAAHSLTSHHSQIRSPTSLLQ 198
L T +RR E S R S AGN P S +S + PT+ +Q
Sbjct: 213 LLTEMRRPEVSVRTSDAGNSSSDSPNDTSNSSKCFRTAPPTTTVQ 257
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 332 LQTRVRRAEDSYRPSVAGNGYKSRPAAHSLTSHHSQIRSPTSLLQ 198
L T +RR E S R S AGN P S +S + PT+ +Q
Sbjct: 213 LLTEMRRPEVSVRTSDAGNSSSDSPNDTSNSSKCFRTAPPTTTVQ 257
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 332 LQTRVRRAEDSYRPSVAGNGYKSRPAAHSLTSHHSQIRSPTSLLQ 198
L T +RR E S R S AGN P S +S + PT+ +Q
Sbjct: 213 LLTEMRRPEVSVRTSDAGNSSSDSPNDTSNSSKCFRTAPPTTTVQ 257
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 332 LQTRVRRAEDSYRPSVAGNGYKSRPAAHSLTSHHSQIRSPTSLLQ 198
L T +RR E S R S AGN P S +S + PT+ +Q
Sbjct: 213 LLTEMRRPEVSVRTSDAGNSSSDSPNDTSNSSKCFRTAPPTTTVQ 257
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 26.2 bits (55), Expect = 8.1
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -2
Query: 337 TYYKLE*GGRRIRTAHRSQATDIKADRQLTASHRITARSDHQRLYSRFNKNGVYSYD 167
TYY + + +R HR + D LT + +T++SD ++ + F+ N V YD
Sbjct: 472 TYYGSQDERKHLR--HRVKKQKDHIDVILTTYNMVTSKSDDKKFFKNFSLNYVI-YD 525
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 26.2 bits (55), Expect = 8.1
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -2
Query: 337 TYYKLE*GGRRIRTAHRSQATDIKADRQLTASHRITARSDHQRLYSRFNKNGVYSYD 167
TYY + + +R HR + D LT + +T++SD ++ + F+ N V YD
Sbjct: 472 TYYGSQDERKHLR--HRVKKQKDHIDVILTTYNMVTSKSDDKKFFKNFSLNYVI-YD 525
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,995,120
Number of Sequences: 27780
Number of extensions: 157177
Number of successful extensions: 486
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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