Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d14
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   3.0  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    27   3.0  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    27   3.0  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    26   5.3  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   9.3  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 71  YRQSSPPVRLTGDVYVVDKNEKVFLVKHVFSNTVPAYLLIRG 196
           Y     P R TG+V  +D+N K  +V  +++    A + + G
Sbjct: 401 YNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAACVSVHG 442


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 197 HLLLKDMQAPCLRTRV*LKKLFRSYQQHTRRPS 99
           H+L K     C+ TR  LK+ +  + +HT + S
Sbjct: 3   HILNKGSSKSCIYTRPCLKRFYHQHYEHTGKLS 35


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 116 VVDKNEKVFLVKHVFSNTVPAYLLI 190
           V D +++VF+V H+F +++PA  L+
Sbjct: 101 VTDASKEVFVVVHMFQDSLPACKLL 125


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 374 NSKHVFDHFGCSSNYCFNNYV 436
           N   VF+H  CS  Y FNN V
Sbjct: 2   NGLRVFEHVHCSVLYKFNNIV 22


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 242 DLNREGISTQTNFRNHL-LLKDMQAPCLRTRV*LKKLFRSYQQHTRRPSNGPAANSAGTR 66
           D++++ I   ++   H  L K M +   R++  L K+   Y+ HT         +S  TR
Sbjct: 148 DIDQKPIPWSSSPIEHTKLTKSMLSSEKRSKNHLSKI---YEDHTSEKGASSVISSNITR 204

Query: 65  AGWDESR*FPW 33
            G   SR  PW
Sbjct: 205 QGIKRSRTLPW 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,196
Number of Sequences: 5004
Number of extensions: 41254
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)