Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d13
         (562 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...   293   3e-81
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    24   3.9  
AY028785-1|AAK32959.1|  509|Anopheles gambiae cytochrome P450 pr...    24   3.9  
AJ130949-1|CAA10258.1|  401|Anopheles gambiae SG1 protein protein.     23   5.2  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   9.0  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   9.0  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score =  293 bits (718), Expect = 3e-81
 Identities = 136/179 (75%), Positives = 146/179 (81%)
 Frame = +1

Query: 25  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 204
           MGFVKVVKNKQYFKRYQV+F+RRREGKTDYYARKRL+ QDKNKYNTPK+RLIVRLSN+D+
Sbjct: 1   MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDI 60

Query: 205 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 384
           TCQ+AY RIEGD IVCAAYSHELPRYGVKVGLTNYAAAY TG                  
Sbjct: 61  TCQIAYRRIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYA 120

Query: 385 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKR 561
                   EY VEPVD GP AFRCYLDVGLARTTTG+RVFGAMKGAVDGGLN+PHS+KR
Sbjct: 121 GCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGSRVFGAMKGAVDGGLNIPHSVKR 179


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 532 HRQQHPS*LQRHEH 491
           H+QQHP   Q H H
Sbjct: 173 HQQQHPGHSQHHHH 186


>AY028785-1|AAK32959.1|  509|Anopheles gambiae cytochrome P450
           protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 368 LTPYTLAQQMSQVMNTMLNLSTMDQEHL 451
           LTP   + +M Q+  TML ++T    HL
Sbjct: 137 LTPTFTSGRMKQMFGTMLQVATELHRHL 164


>AJ130949-1|CAA10258.1|  401|Anopheles gambiae SG1 protein protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 262 NKQRTQYGHLQSESRPPGML 203
           +KQ  +Y H   E +PPG L
Sbjct: 152 SKQALKYYHYYLEGQPPGQL 171


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 135 CSGQEQI*HT*ISSDCASLQQRCNMP 212
           C G   I H    S+CA   QRC+ P
Sbjct: 553 CGGAHHIGH----SECARSAQRCSRP 574


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 64  KRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYR 174
           KR+ V   R   GK++++   + V+ D+  +  P+ R
Sbjct: 25  KRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQR 61


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,575
Number of Sequences: 2352
Number of extensions: 12217
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52563375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)