Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29d13
(562 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical pr... 237 5e-63
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 30 1.3
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z69386-3|CAA93432.2| 322|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 27 9.2
AF022969-1|AAB69894.3| 391|Caenorhabditis elegans Hypothetical ... 27 9.2
>Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical
protein F54C9.5 protein.
Length = 293
Score = 237 bits (579), Expect = 5e-63
Identities = 112/179 (62%), Positives = 130/179 (72%)
Frame = +1
Query: 25 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 204
MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60
Query: 205 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 384
Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY+TG
Sbjct: 61 VAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYK 120
Query: 385 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKR 561
+YNVE + F+ LD+GLARTTTG+++F MKG DGG+NVPHS R
Sbjct: 121 GHEELTGEDYNVEE-EGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESR 178
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 259 KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 146
+QR ++ + + P HLC R+++ DI CYI CS
Sbjct: 980 RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 259 KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 146
+QR ++ + + P HLC R+++ DI CYI CS
Sbjct: 980 RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018
>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
protein K10G4.5 protein.
Length = 1251
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 154 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 273
YN P+YR +++L K C+ + GD++ +CA + EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 301 SDQPSHHNVATHVNKQRTQYGHLQSESRP 215
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 301 SDQPSHHNVATHVNKQRTQYGHLQSESRP 215
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 301 SDQPSHHNVATHVNKQRTQYGHLQSESRP 215
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z69386-3|CAA93432.2| 322|Caenorhabditis elegans Hypothetical
protein ZK596.3 protein.
Length = 322
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 201 IFVGETHNQTIFRCVI--FVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNES 28
+ + TH +F+C++ FV + N+ II FP T + + L V+ L +S
Sbjct: 141 VLLSMTH--ALFQCMLINFVSMANHSPTLERIIGFPLVTVETVHNLCLYVISALQYEQDS 198
Query: 27 HIL 19
H++
Sbjct: 199 HLM 201
>Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical
protein T13H5.2 protein.
Length = 408
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = -1
Query: 301 SDQPSHHNVATHVNKQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYICSCPEQRGVY 122
+D P+ +V+ + T + + E PG W +++DI + + + V
Sbjct: 291 NDLPAEKLTKLNVSARSTTFVPITLEGNVPGRKLYWWWRLENNDINFSILRAAEGEEKVA 350
Query: 121 EHNNQFSLH 95
EH++ + +H
Sbjct: 351 EHDDDYMVH 359
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 11 LRFKIWDSLKL*RTNN---TSRGTK*NSRGVVKGKLIIMLVNASLFRTRTNITHLNIV*L 181
L +++ D + R +N T G NS+GVVK KL L S+ T ++ L ++
Sbjct: 68 LHYQLLDGIATFRLDNDDTTIGGVPRNSQGVVKIKLSCGLNRLSVENKVTEVSSLELIHN 127
Query: 182 CV 187
C+
Sbjct: 128 CI 129
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 11 LRFKIWDSLKL*RTNN---TSRGTK*NSRGVVKGKLIIMLVNASLFRTRTNITHLNIV*L 181
L +++ D + R +N T G NS+GVVK KL L S+ T ++ L ++
Sbjct: 68 LHYQLLDGIATFRLDNDDTTIGGVPRNSQGVVKIKLSCGLNRLSVENKVTEVSSLELIHN 127
Query: 182 CV 187
C+
Sbjct: 128 CI 129
>AF022969-1|AAB69894.3| 391|Caenorhabditis elegans Hypothetical
protein C29G2.5 protein.
Length = 391
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 145 KNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 237
K+K TP YRL++ L + D+T V S I G
Sbjct: 187 KSKSRTPTYRLMLILGSLDLTGLVISSLIPG 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,833,344
Number of Sequences: 27780
Number of extensions: 264917
Number of successful extensions: 709
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -