Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d12
         (113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    27   0.33 
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    24   3.0  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    23   7.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    23   7.0  

>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 93  NKHFKIAGLVYGRWTKMNIHPINRLI 16
           N H  I  +V   W+K+ IHP N +I
Sbjct: 309 NSHLSILAIV-DSWSKLGIHPQNHMI 333


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 67  RVWPLDKNEHSSDKPVDRDLN 5
           R+W LD +    D PV+  LN
Sbjct: 397 RLWNLDNDVLHKDNPVEESLN 417


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 1   LYLNLYQPVYRMNVHFCPTAIHEPSYFEV 87
           L+LN    +++  VH  P   H P Y EV
Sbjct: 306 LFLNKLD-LFKRKVHISPIQKHFPDYQEV 333


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 50  VQRPYTSPAILKCLLL 97
           V RPY S  I+KC+ L
Sbjct: 692 VLRPYVSEIIVKCMKL 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 485,286
Number of Sequences: 5004
Number of extensions: 5475
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)