Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29d12
         (113 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81498-2|CAB04085.1|  760|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z81498-1|CAB04086.1|  692|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U12682-1|AAB63525.1|  692|Caenorhabditis elegans celfurPC protei...    26   3.1  
Z36948-5|CAD30435.1|  453|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z36948-4|CAA85411.3|  615|Caenorhabditis elegans Hypothetical pr...    26   4.1  

>Z81498-2|CAB04085.1|  760|Caenorhabditis elegans Hypothetical
           protein F11A6.1b protein.
          Length = 760

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 73  WARVWPLDKNEHSSDKPVDRDLNI 2
           W  +W L++ EH SD     D N+
Sbjct: 179 WTDMWYLNRGEHHSDSTTRMDHNV 202


>Z81498-1|CAB04086.1|  692|Caenorhabditis elegans Hypothetical
           protein F11A6.1a protein.
          Length = 692

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 73  WARVWPLDKNEHSSDKPVDRDLNI 2
           W  +W L++ EH SD     D N+
Sbjct: 179 WTDMWYLNRGEHHSDSTTRMDHNV 202


>U12682-1|AAB63525.1|  692|Caenorhabditis elegans celfurPC protein
           protein.
          Length = 692

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 73  WARVWPLDKNEHSSDKPVDRDLNI 2
           W  +W L++ EH SD     D N+
Sbjct: 179 WTDMWYLNRGEHHSDSTTRMDHNV 202


>Z36948-5|CAD30435.1|  453|Caenorhabditis elegans Hypothetical
           protein D2089.4b protein.
          Length = 453

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 4   YLNLYQPVYRMNVHFCPTAIHEPSYFEVF 90
           YLN+Y P   +++   PT++ E    E+F
Sbjct: 368 YLNIYPPCATLHLSNIPTSVSEEKLKEMF 396


>Z36948-4|CAA85411.3|  615|Caenorhabditis elegans Hypothetical
           protein D2089.4a protein.
          Length = 615

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 4   YLNLYQPVYRMNVHFCPTAIHEPSYFEVF 90
           YLN+Y P   +++   PT++ E    E+F
Sbjct: 530 YLNIYPPCATLHLSNIPTSVSEEKLKEMF 558


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,290
Number of Sequences: 27780
Number of extensions: 28056
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 12,740,198
effective HSP length: 19
effective length of database: 12,212,378
effective search space used: 219822804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)